Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30c23
         (356 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0080 - 17742425-17742578,17742855-17743038,17743202-177432...    27   3.3  
12_01_0560 - 4532398-4532724,4532975-4533235,4533670-4533855,453...    27   4.3  

>05_04_0080 -
           17742425-17742578,17742855-17743038,17743202-17743273,
           17743343-17743469,17743915-17744135,17744234-17744387
          Length = 303

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 117 TMLAYTNYSSLSFGNEISISRLRAPMPQLIEPEFKCLNLHIDE 245
           T L +    S++ G    ++ L   +P LI  +FK  N+ +DE
Sbjct: 175 TRLEFKQRLSIAIGAAKGLNHLHTLVPPLIHKDFKTSNVLVDE 217


>12_01_0560 -
           4532398-4532724,4532975-4533235,4533670-4533855,
           4533922-4533936,4533941-4534246,4535032-4535135,
           4535669-4535801
          Length = 443

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +3

Query: 81  VDLINSCPDDIATMLAYTNYSSLSFGNEISISRLRAPMPQLIEPEFKCLNLHI 239
           + + +  P+ +A    +   S + +G+ + I R+   +PQ I+ E   L LH+
Sbjct: 168 ISVADRAPNVVAINATFALVSPIEYGHVLLIPRVLDRLPQRIDQESFLLALHM 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,753,323
Number of Sequences: 37544
Number of extensions: 152561
Number of successful extensions: 378
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)