Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30c23
         (356 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC096300-1|AAH96300.1|  694|Homo sapiens cyclic nucleotide gated...    29   3.2  
BC096299-1|AAH96299.1|  676|Homo sapiens cyclic nucleotide gated...    29   3.2  
BC096298-1|AAH96298.1|  694|Homo sapiens cyclic nucleotide gated...    29   3.2  
AK131300-1|BAD18468.1|  698|Homo sapiens mRNA.  protein.               29   3.2  
AF065314-1|AAC17440.1|  694|Homo sapiens cone photoreceptor cGMP...    29   3.2  
AC092675-2|AAY24181.1|  694|Homo sapiens unknown protein.              29   3.2  

>BC096300-1|AAH96300.1|  694|Homo sapiens cyclic nucleotide gated
           channel alpha 3 protein.
          Length = 694

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 60  KMYNQLSVDLINSCPDDIATMLAYTNYSSLSFGNEISISRL 182
           K   Q  +D+++  P D+A +   TNY  + F   +  SRL
Sbjct: 244 KTTTQFKLDVLSLVPTDLAYLKVGTNYPEVRFNRLLKFSRL 284


>BC096299-1|AAH96299.1|  676|Homo sapiens cyclic nucleotide gated
           channel alpha 3 protein.
          Length = 676

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 60  KMYNQLSVDLINSCPDDIATMLAYTNYSSLSFGNEISISRL 182
           K   Q  +D+++  P D+A +   TNY  + F   +  SRL
Sbjct: 226 KTTTQFKLDVLSLVPTDLAYLKVGTNYPEVRFNRLLKFSRL 266


>BC096298-1|AAH96298.1|  694|Homo sapiens cyclic nucleotide gated
           channel alpha 3 protein.
          Length = 694

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 60  KMYNQLSVDLINSCPDDIATMLAYTNYSSLSFGNEISISRL 182
           K   Q  +D+++  P D+A +   TNY  + F   +  SRL
Sbjct: 244 KTTTQFKLDVLSLVPTDLAYLKVGTNYPEVRFNRLLKFSRL 284


>AK131300-1|BAD18468.1|  698|Homo sapiens mRNA.  protein.
          Length = 698

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 60  KMYNQLSVDLINSCPDDIATMLAYTNYSSLSFGNEISISRL 182
           K   Q  +D+++  P D+A +   TNY  + F   +  SRL
Sbjct: 248 KTTTQFKLDVLSLVPTDLAYLKVGTNYPEVRFNRLLKFSRL 288


>AF065314-1|AAC17440.1|  694|Homo sapiens cone photoreceptor
           cGMP-gated channel alpha subunit protein.
          Length = 694

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 60  KMYNQLSVDLINSCPDDIATMLAYTNYSSLSFGNEISISRL 182
           K   Q  +D+++  P D+A +   TNY  + F   +  SRL
Sbjct: 244 KTTTQFKLDVLSLVPTDLAYLKVGTNYPEVRFNRLLKFSRL 284


>AC092675-2|AAY24181.1|  694|Homo sapiens unknown protein.
          Length = 694

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 60  KMYNQLSVDLINSCPDDIATMLAYTNYSSLSFGNEISISRL 182
           K   Q  +D+++  P D+A +   TNY  + F   +  SRL
Sbjct: 244 KTTTQFKLDVLSLVPTDLAYLKVGTNYPEVRFNRLLKFSRL 284


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,410,940
Number of Sequences: 237096
Number of extensions: 866258
Number of successful extensions: 1479
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1479
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2133208582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)