Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30c23
(356 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038623-5|AAO91700.1| 531|Caenorhabditis elegans Hypothetical ... 31 0.31
Z70287-2|CAA94298.2| 700|Caenorhabditis elegans Hypothetical pr... 28 1.7
AC006684-8|AAF39963.2| 132|Caenorhabditis elegans Hypothetical ... 27 5.1
Z81066-1|CAB02970.1| 919|Caenorhabditis elegans Hypothetical pr... 26 8.9
Z50045-2|CAA90363.2| 485|Caenorhabditis elegans Hypothetical pr... 26 8.9
U39850-9|AAM45371.1| 440|Caenorhabditis elegans Polyq (poly glu... 26 8.9
U39850-8|AAM45369.1| 558|Caenorhabditis elegans Polyq (poly glu... 26 8.9
U39850-7|AAM45370.1| 573|Caenorhabditis elegans Polyq (poly glu... 26 8.9
U39850-5|AAM45368.1| 670|Caenorhabditis elegans Polyq (poly glu... 26 8.9
U39850-4|ABB51184.1| 672|Caenorhabditis elegans Polyq (poly glu... 26 8.9
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu... 26 8.9
>AF038623-5|AAO91700.1| 531|Caenorhabditis elegans Hypothetical
protein T08B6.9 protein.
Length = 531
Score = 30.7 bits (66), Expect = 0.31
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 245 FINMQIQALEFWFDKLWHWSPEPAD 171
F N+Q + + DKLWHW+ +P D
Sbjct: 35 FWNIQPTEEDIYQDKLWHWNDQPDD 59
>Z70287-2|CAA94298.2| 700|Caenorhabditis elegans Hypothetical
protein R09E10.3 protein.
Length = 700
Score = 28.3 bits (60), Expect = 1.7
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +3
Query: 6 EAMLTYIGKE-RTKMIVKNKMY-NQLS-VDLINSCPDDIATMLAYTNYSSLSFGNEISIS 176
E L ++ E +TK ++++K Y + L + N C DDI M ++ SF + +
Sbjct: 188 EISLMFVDAEIKTKQLIRDKSYLSSLKYIVQFNECSDDIKEMARENDFRLWSFNEFVEMG 247
Query: 177 RLRAPMPQL 203
+ + P +
Sbjct: 248 KKQKHRPHV 256
>AC006684-8|AAF39963.2| 132|Caenorhabditis elegans Hypothetical
protein T02H6.3 protein.
Length = 132
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 291 RSYQVFFLIGHGHVELHQY 235
R+Y V LI H HV+ H Y
Sbjct: 3 RTYTVLLLIAHAHVQSHFY 21
>Z81066-1|CAB02970.1| 919|Caenorhabditis elegans Hypothetical
protein F17B5.2 protein.
Length = 919
Score = 25.8 bits (54), Expect = 8.9
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -2
Query: 157 PKLSDE*LV*ANIVAMSSGQELIKSTESWLYILFLTIIFVRSLPI*VS 14
P LSDE + +++I+ T S YIL LT++F+ + P +S
Sbjct: 222 PLLSDEESQDVERNPTNVSKDIIEKTSS--YILILTLVFITTCPFSLS 267
>Z50045-2|CAA90363.2| 485|Caenorhabditis elegans Hypothetical
protein F38B2.3 protein.
Length = 485
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 261 VQSGKTLDSFFVARTYDFKQYSLDHSDFTAY 353
+ SG TL F+ D K+YSL HSD Y
Sbjct: 49 MSSGTTL-KFWSIFNIDDKEYSLYHSDLRGY 78
>U39850-9|AAM45371.1| 440|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform f
protein.
Length = 440
Score = 25.8 bits (54), Expect = 8.9
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +3
Query: 30 KERTKMIVKNKMYNQLSVDLINSCPDDIAT----MLAYTNYSSLSFGNEISISRLRA 188
K T ++ N ++ L+++ INS PD + T + Y N ++ G+ + S L+A
Sbjct: 306 KPPTDVLDPNTEFSGLTMEQINSAPDTLKTCHQKLFKYVNADTILIGHSLE-SDLKA 361
>U39850-8|AAM45369.1| 558|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform d
protein.
Length = 558
Score = 25.8 bits (54), Expect = 8.9
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +3
Query: 30 KERTKMIVKNKMYNQLSVDLINSCPDDIAT----MLAYTNYSSLSFGNEISISRLRA 188
K T ++ N ++ L+++ INS PD + T + Y N ++ G+ + S L+A
Sbjct: 424 KPPTDVLDPNTEFSGLTMEQINSAPDTLKTCHQKLFKYVNADTILIGHSLE-SDLKA 479
>U39850-7|AAM45370.1| 573|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform e
protein.
Length = 573
Score = 25.8 bits (54), Expect = 8.9
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +3
Query: 30 KERTKMIVKNKMYNQLSVDLINSCPDDIAT----MLAYTNYSSLSFGNEISISRLRA 188
K T ++ N ++ L+++ INS PD + T + Y N ++ G+ + S L+A
Sbjct: 439 KPPTDVLDPNTEFSGLTMEQINSAPDTLKTCHQKLFKYVNADTILIGHSLE-SDLKA 494
>U39850-5|AAM45368.1| 670|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform c
protein.
Length = 670
Score = 25.8 bits (54), Expect = 8.9
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +3
Query: 30 KERTKMIVKNKMYNQLSVDLINSCPDDIAT----MLAYTNYSSLSFGNEISISRLRA 188
K T ++ N ++ L+++ INS PD + T + Y N ++ G+ + S L+A
Sbjct: 536 KPPTDVLDPNTEFSGLTMEQINSAPDTLKTCHQKLFKYVNADTILIGHSLE-SDLKA 591
>U39850-4|ABB51184.1| 672|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform g
protein.
Length = 672
Score = 25.8 bits (54), Expect = 8.9
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +3
Query: 30 KERTKMIVKNKMYNQLSVDLINSCPDDIAT----MLAYTNYSSLSFGNEISISRLRA 188
K T ++ N ++ L+++ INS PD + T + Y N ++ G+ + S L+A
Sbjct: 538 KPPTDVLDPNTEFSGLTMEQINSAPDTLKTCHQKLFKYVNADTILIGHSLE-SDLKA 593
>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform b
protein.
Length = 1647
Score = 25.8 bits (54), Expect = 8.9
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +3
Query: 30 KERTKMIVKNKMYNQLSVDLINSCPDDIAT----MLAYTNYSSLSFGNEISISRLRA 188
K T ++ N ++ L+++ INS PD + T + Y N ++ G+ + S L+A
Sbjct: 1513 KPPTDVLDPNTEFSGLTMEQINSAPDTLKTCHQKLFKYVNADTILIGHSLE-SDLKA 1568
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,012,677
Number of Sequences: 27780
Number of extensions: 148860
Number of successful extensions: 430
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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