Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30c19
         (657 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    25   0.72 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   1.3  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    21   6.7  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   8.9  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 9/40 (22%), Positives = 19/40 (47%)
 Frame = +2

Query: 527 THHQQKTPFLLVGTQIDLRDDSATMEKLAKIKQKPVSLEQ 646
           THH  K P   +GT + +      +E++  +    +++ Q
Sbjct: 276 THHLDKNPENTLGTMLSIHPSKLDVEQMNLLHSNDLNMHQ 315


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +3

Query: 153 EPNSPYNKRKFGV-QIVKKQ 209
           EP SP+   +FGV QIVK++
Sbjct: 27  EPRSPHTAWQFGVSQIVKRE 46


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 509 KWVPEITHHQQKTPFLLVGTQIDL 580
           K   ++ +   KT  LLVG +ID+
Sbjct: 211 KRASDLCNEANKTKILLVGLKIDI 234


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 5/21 (23%), Positives = 14/21 (66%)
 Frame = +1

Query: 46  WRL*HSTFPIYNVVLLYSFEI 108
           W + + T+ +Y + +++SF +
Sbjct: 23  WHVENPTYRLYKIFVVFSFAV 43


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,686
Number of Sequences: 336
Number of extensions: 3554
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)