Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30c19
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    25   0.84 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.8  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = -2

Query: 149 ANSDRKFLITKIINISNEYNNTTL*IGNVECYSL 48
           + + ++ ++T I+  S +YNNT + I +VE Y+L
Sbjct: 178 STTGKRNVVTPIVQ-SFDYNNTWVYIADVEGYAL 210


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -3

Query: 604 LHCSRIIAQVYLRPNQQKRCLLLMMSYFRDPLF 506
           L+  R+  QV+L  +Q+++  + +     DP+F
Sbjct: 183 LNAVRLCFQVFLEGSQKRKFNVPLQPVVSDPIF 215


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -3

Query: 604 LHCSRIIAQVYLRPNQQKRCLLLMMSYFRDPLF 506
           L+  R+  QV+L  +Q+++  + +     DP+F
Sbjct: 183 LNAVRLCFQVFLEGSQKRKFNVPLQPVVSDPIF 215


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 331 YSWNIL*WKFVSCIADQKTCFTNSTITHNN 242
           Y+W+ + + + S  A     F    IT NN
Sbjct: 158 YAWSTIDYTYDSIEARDSAIFDGDFITENN 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,903
Number of Sequences: 438
Number of extensions: 4232
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)