Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30c16
         (183 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   1.0  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   1.0  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    20   3.1  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    20   3.1  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    20   3.1  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    20   3.1  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    20   3.1  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    20   3.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    20   3.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    19   5.5  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    18   9.5  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    18   9.5  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    18   9.5  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    18   9.5  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 109 IFTYFIKLFIIIF 147
           I+ YF+ LF+II+
Sbjct: 222 IWVYFVPLFLIIY 234


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 109 IFTYFIKLFIIIF 147
           I+ YF+ LF+II+
Sbjct: 98  IWVYFVPLFLIIY 110


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 110 IFFKLNILTYHNDNEVKYH 54
           I   L+  T HN+N  KY+
Sbjct: 81  IISSLSNKTIHNNNNYKYN 99


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 110 IFFKLNILTYHNDNEVKYH 54
           I   L+  T HN+N  KY+
Sbjct: 81  IISSLSNKTIHNNNNYKYN 99


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 110 IFFKLNILTYHNDNEVKYH 54
           I   L+  T HN+N  KY+
Sbjct: 81  IISSLSNRTIHNNNNYKYN 99


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 110 IFFKLNILTYHNDNEVKYH 54
           I   L+  T HN+N  KY+
Sbjct: 81  IISSLSNKTIHNNNNYKYN 99


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 110 IFFKLNILTYHNDNEVKYH 54
           I   L+  T HN+N  KY+
Sbjct: 81  IISSLSNKTIHNNNNYKYN 99


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 110 IFFKLNILTYHNDNEVKYH 54
           I   L+  T HN+N  KY+
Sbjct: 81  IISSLSNKTIHNNNNYKYN 99


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 110 IFFKLNILTYHNDNEVKYH 54
           I   L+  T HN+N  KY+
Sbjct: 314 IISSLSNKTIHNNNNYKYN 332


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 8   FYLKLRLISFLFI*VRGTLPRYRYDKLI 91
           FY   + +  L+   + +LP Y+Y+ LI
Sbjct: 434 FYQLYKKVMNLYQQYQQSLPVYQYNDLI 461



 Score = 18.2 bits (35), Expect = 9.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 93  YINLS*R*RGKVPRTQI 43
           Y NL  +  G+ P TQI
Sbjct: 718 YANLYTKYHGQYPNTQI 734


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +2

Query: 41  FI*VRGTLPRYRY 79
           F+ ++  +PR+RY
Sbjct: 365 FVSIQEQIPRFRY 377


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +2

Query: 41  FI*VRGTLPRYRY 79
           F+ ++  +PR+RY
Sbjct: 365 FVSIQEQIPRFRY 377


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +2

Query: 41  FI*VRGTLPRYRY 79
           F+ ++  +PR+RY
Sbjct: 365 FVSIQEQIPRFRY 377


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +2

Query: 41  FI*VRGTLPRYRY 79
           F+ ++  +PR+RY
Sbjct: 354 FVSIQEQIPRFRY 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,224
Number of Sequences: 438
Number of extensions: 344
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 40
effective length of database: 128,823
effective search space used:  2576460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)