Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30c12
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...   284   7e-78
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    71   2e-13
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    48   1e-06
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    28   1.5  
SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|ch...    27   3.4  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   5.9  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   5.9  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   7.8  
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    25   7.8  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    25   7.8  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   7.8  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score =  284 bits (697), Expect = 7e-78
 Identities = 134/181 (74%), Positives = 159/181 (87%)
 Frame = +2

Query: 155 EISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNL 334
           E+ +ILEERI GA  +A + E+GRVLSIGDGIAR+ GL N+QAEE+VEFSSG+KGMALNL
Sbjct: 35  EVPSILEERIRGAYNQAQMMESGRVLSIGDGIARISGLSNVQAEELVEFSSGIKGMALNL 94

Query: 335 EPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSR 514
           E D VG V+FGND+L++EG++VKRT  IVDVPVGE +LGRVVDALGNPIDGKGPI T  R
Sbjct: 95  EADTVGCVLFGNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGPIKTTER 154

Query: 515 MRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 694
            RV +KAPGI+PR SV EPMQTG+KA+DS+VPIGRGQRELIIGDRQTGKTA+A+DTI+N 
Sbjct: 155 RRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRGQRELIIGDRQTGKTAIALDTILNH 214

Query: 695 Q 697
           +
Sbjct: 215 K 215


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 38/113 (33%), Positives = 60/113 (53%)
 Frame = +2

Query: 353 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 532
           + + G + L++ G  V  TG+ + +PVG   LGR+++ +G P+D +GPI       +   
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHAD 166

Query: 533 APGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 691
           AP    + +  E ++TGIK VD L P  RG +  + G    GKT   I  +IN
Sbjct: 167 APSFEEQSTTPEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVF-IQELIN 218


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
 Frame = +2

Query: 407 TGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIP--RVSVREPMQT 580
           TG  + +PV E +LGRV +  G PID KGP +  +   + I    I P  R+   E +QT
Sbjct: 92  TGHSMRIPVSEDMLGRVFNGSGLPID-KGP-NLLAEDYLDINGSPINPYARIYPEEMIQT 149

Query: 581 GIKAVDSLVPIGRGQR 628
           GI ++D L  I RGQ+
Sbjct: 150 GISSIDGLNSIARGQK 165


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 658 TSLTVTNDQLTLTTANWYQRVNSLDTSLHRLTHRHPGNDT 539
           TS   ++  L  +  N  QR++SLD+S       HPGN T
Sbjct: 154 TSDAYSSSILENSPPNKVQRLSSLDSSQDSFQEEHPGNVT 193


>SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 333

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +2

Query: 479 IDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTG 658
           +D K PI+T  +        G I  V + E     IK   ++VPI   + E  +  R   
Sbjct: 125 VDHKVPIETTMKALKAFVDSGEISCVGLSEASAESIKRALAIVPIAAVETEYSLFSRDIE 184

Query: 659 KTALAIDT 682
           K  + +DT
Sbjct: 185 KNGI-LDT 191


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 293 PSPQPGCSSSHKHERYHHQCSRH-DQSLLDQPWAR 192
           P P  G    HK  ++   CS H D S+ ++P A+
Sbjct: 405 PVPHNGTKPDHKPWKHEEHCSCHEDHSVHERPSAK 439


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +2

Query: 506 KSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTI 685
           KS +   +     IP V   +      + V   + +G G   +I+G R +GK+ L +D I
Sbjct: 537 KSTIAARLCGKSHIPLVGHMDEQTKLYQWVRQTIVLGEGNSVIIVGPRGSGKSVL-VDDI 595

Query: 686 INQ 694
           +++
Sbjct: 596 LSR 598


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 439 LSDGNVYDSTSTLDNISFLDKLVIT 365
           L  GN+Y+STS  + +S LD   IT
Sbjct: 49  LEVGNIYNSTSASEILSTLDAKYIT 73


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 580 SLHRLTHRHPGNDTWRLNTDPHTGFR 503
           SLH  T  H  +D  R N+DP +  R
Sbjct: 428 SLHDSTTSHNKSDLMRTNSDPQSAMR 453


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 456 TRPRICSPTGTSTIAP 409
           TRPR+ +P+ +ST+ P
Sbjct: 55  TRPRVSAPSSSSTVVP 70


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 114 HLANYMSQPPTKLPRSPPSSKRGSLEP 194
           H  +Y+S P      SPP+SK  S EP
Sbjct: 113 HQNDYISSPHADFSFSPPASKIQSHEP 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,069
Number of Sequences: 5004
Number of extensions: 61976
Number of successful extensions: 202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)