Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30c10
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    31   0.16 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    29   0.86 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   2.0  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    27   3.5  
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|...    26   4.6  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    26   6.0  

>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +1

Query: 289 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSS 432
           P  P ++P    V P +PV P T++     +  P ++P     +VP S
Sbjct: 221 PPQPAVAPSVSAVVPNLPVHPATAINAQSQSGNPLSNPLFQPSNVPQS 268


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +1

Query: 271 VKHQRWPKPPELSPIYLPVSPVMPVQPLT---SLTLTQTASGPETSPAS 408
           VKH   P PP   P+   +SP MP  PLT   S T     S PE+ P S
Sbjct: 740 VKHH--PPPP---PVRSSISPSMPPAPLTHANSSTPMNYVSQPESPPQS 783


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 108 NQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEI-LKDMASQGDYASQ 275
           NQ S      D+D+  ASS++S A     D+D      N+       +A  GD +SQ
Sbjct: 3   NQSSSGSNTSDLDEESASSLVSSAASPFIDSDLETPRPNISRASTGQLAEDGDTSSQ 59


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 21/87 (24%), Positives = 34/87 (39%)
 Frame = +1

Query: 187 TSMTLTKASPSSTFKRS*RTWPARAIMQVKHQRWPKPPELSPIYLPVSPVMPVQPLTSLT 366
           +S   +KA+    FK +       ++  V+    P PP + P  LP  P M +  +    
Sbjct: 390 SSAVFSKATAEPAFKSAMAIPDMPSMPHVQGFPAPFPPFMMP-GLPQMPPMMMNAIAGQV 448

Query: 367 LTQTASGPETSPASDNLSVPSSDTWDK 447
                + P T+    N SVP   +  K
Sbjct: 449 YHNNRNPPRTNSRPSNASVPPPSSLHK 475


>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +3

Query: 78  SAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEILKDMASQ 257
           S   +PSV+I     +EIP  +       + + A DY+  T     I++V  ++  + S 
Sbjct: 80  SVEISPSVSIQNRETDEIPSFLTSALQDLLNALAVDYLKFTPSKAWIIHVDAVV--ILSS 137

Query: 258 GDYASQASAVAQTA 299
             Y +  SA++  A
Sbjct: 138 SPYENILSALSLAA 151


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +1

Query: 250 PARAIMQVKHQRWPKPPELSPIYLP--VSPVMPVQPLTSLTLTQTASGPETSPASDNLSV 423
           P   +M + +Q     P +     P   +PV P QPL  L  + T   P +  +   L++
Sbjct: 258 PFEQMMAMTNQGMSVSPGVETTSSPFFTAPVEPNQPLQPLRPSMTGPVPSSMGSEATLNM 317

Query: 424 PSS 432
           PS+
Sbjct: 318 PST 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,335
Number of Sequences: 5004
Number of extensions: 51981
Number of successful extensions: 199
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)