Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30c10
(706 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF144094-1|AAF05903.1| 3530|Homo sapiens unconventional myosin-1... 32 1.7
BC041329-1|AAH41329.1| 268|Homo sapiens ELL associated factor 1... 31 3.0
BC018708-1|AAH18708.1| 434|Homo sapiens zinc finger CCCH-type c... 31 4.0
AK027357-1|BAB55059.1| 434|Homo sapiens protein ( Homo sapiens ... 31 4.0
AF272973-1|AAK58687.1| 268|Homo sapiens EAF1 protein. 31 4.0
Z34282-1|CAA84036.1| 98|Homo sapiens mucin protein. 30 7.0
Z34278-1|CAA84032.1| 279|Homo sapiens mucin protein. 30 7.0
L12141-1|AAA58477.1| 347|Homo sapiens fork head-related protein... 30 7.0
X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest... 30 9.3
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest... 30 9.3
>AF144094-1|AAF05903.1| 3530|Homo sapiens unconventional myosin-15
protein.
Length = 3530
Score = 32.3 bits (70), Expect = 1.7
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 289 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNL 417
PKP L+P L +P +P++P+ + L Q + PET+ S L
Sbjct: 2518 PKP--LAPAPLAKAPRLPIKPVAAPVLAQDQASPETTSPSPEL 2558
>BC041329-1|AAH41329.1| 268|Homo sapiens ELL associated factor 1
protein.
Length = 268
Score = 31.5 bits (68), Expect = 3.0
Identities = 25/81 (30%), Positives = 34/81 (41%)
Frame = +1
Query: 178 HGTTSMTLTKASPSSTFKRS*RTWPARAIMQVKHQRWPKPPELSPIYLPVSPVMPVQPLT 357
H T L K S S K++ R + I Q+ +PP+ S P P P+
Sbjct: 92 HDTGEFVLEKLSSSIQVKKT-RAEGSSKIQARMEQQPTRPPQTS------QPPPPPPPMP 144
Query: 358 SLTLTQTASGPETSPASDNLS 420
T+ GP+TSP DN S
Sbjct: 145 FRAPTKPPVGPKTSPLKDNPS 165
>BC018708-1|AAH18708.1| 434|Homo sapiens zinc finger CCCH-type
containing 10 protein.
Length = 434
Score = 31.1 bits (67), Expect = 4.0
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Frame = +1
Query: 289 PKPPELSPIYLPVSPVMPV-----QPLTSLTLTQTASGPETSP-ASDNLSV 423
P P ++P+ + V+PV PV QPL +T++ T + T P AS ++ +
Sbjct: 379 PPPVSMAPVAVSVAPVAPVAVSMAQPLAGITMSHTTTPMVTYPIASQSMRI 429
>AK027357-1|BAB55059.1| 434|Homo sapiens protein ( Homo sapiens
cDNA FLJ14451 fis, clone HEMBB1001834. ).
Length = 434
Score = 31.1 bits (67), Expect = 4.0
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Frame = +1
Query: 289 PKPPELSPIYLPVSPVMPV-----QPLTSLTLTQTASGPETSP-ASDNLSV 423
P P ++P+ + V+PV PV QPL +T++ T + T P AS ++ +
Sbjct: 379 PPPVSMAPVAVSVAPVAPVAVSMAQPLAGITMSHTTTPMVTYPIASQSMRI 429
>AF272973-1|AAK58687.1| 268|Homo sapiens EAF1 protein.
Length = 268
Score = 31.1 bits (67), Expect = 4.0
Identities = 25/81 (30%), Positives = 34/81 (41%)
Frame = +1
Query: 178 HGTTSMTLTKASPSSTFKRS*RTWPARAIMQVKHQRWPKPPELSPIYLPVSPVMPVQPLT 357
H T L K S S K++ R + I Q+ +PP+ S P P P+
Sbjct: 92 HDTGEYVLEKLSSSIQVKKT-RAEGSSKIQARMEQQPTRPPQTS------QPPPPPPPMP 144
Query: 358 SLTLTQTASGPETSPASDNLS 420
T+ GP+TSP DN S
Sbjct: 145 FRAPTKPPVGPKTSPLKDNPS 165
>Z34282-1|CAA84036.1| 98|Homo sapiens mucin protein.
Length = 98
Score = 30.3 bits (65), Expect = 7.0
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Frame = +1
Query: 181 GTTSMTLTKASPSSTFKRS*RTWPARAIMQVKHQRWPKPPELSPIYLPVSPVMPVQPLTS 360
GTT + S +S S + P + PE +P SPV P TS
Sbjct: 3 GTTPSAVPTTSITSAPTTSTNSAPISSTTSATTTSRISGPETTP-----SPV-PTASTTS 56
Query: 361 LTLTQTASGPETSPA----SDNLSVPSSDT 438
+ T T SGP T+P+ + +SVP++ T
Sbjct: 57 ASTTSTTSGPGTTPSPVPTTSTISVPTTST 86
>Z34278-1|CAA84032.1| 279|Homo sapiens mucin protein.
Length = 279
Score = 30.3 bits (65), Expect = 7.0
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Frame = +1
Query: 181 GTTSMTLTKASPSSTFKRS*RTWPARAIMQVKHQRWPKPPELSPIYLPVSPVMPVQPLTS 360
GTT + S +S S + P + PE +P SPV P TS
Sbjct: 157 GTTPSAVPTTSITSVPTTSTNSAPISSTTSATTTSRISGPETTP-----SPV-PTASTTS 210
Query: 361 LTLTQTASGPETSPA----SDNLSVPSSDT 438
+ T T SGP T+P+ + +SVP++ T
Sbjct: 211 ASTTSTTSGPGTTPSPVPTTSTISVPTTST 240
>L12141-1|AAA58477.1| 347|Homo sapiens fork head-related protein
protein.
Length = 347
Score = 30.3 bits (65), Expect = 7.0
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 286 WPKPPELSPIYLPVSPVMPVQPLTS-LTLTQTASG-PETSPASDNLSVP 426
W PE +Y PV+PV + PL S +TL +S P PAS S P
Sbjct: 15 WSYYPEAGEVYSPVTPVPTMAPLNSYMTLNPLSSPYPGGLPASPLPSGP 63
>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 29.9 bits (64), Expect = 9.3
Identities = 37/123 (30%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Frame = +1
Query: 76 QAPTLHHR*PSINTVIMKFHATLMMEKLVP*SHVHGTTSMTLTKASP--SSTFKRS*RTW 249
Q+PT PS + + T K P S + +S T SP S T + T
Sbjct: 1814 QSPTYTPSSPSYSPSSPSYSPT--SPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTS 1871
Query: 250 PARAIMQVKHQ-RWPKPPELSPIYLPVSPV-MPVQPLTSLTL-TQTASGPETSPASDNLS 420
P + + PK SP Y P SPV P P S T T + + P+ SP S S
Sbjct: 1872 PKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYS 1931
Query: 421 VPS 429
S
Sbjct: 1932 PTS 1934
>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 29.9 bits (64), Expect = 9.3
Identities = 37/123 (30%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Frame = +1
Query: 76 QAPTLHHR*PSINTVIMKFHATLMMEKLVP*SHVHGTTSMTLTKASP--SSTFKRS*RTW 249
Q+PT PS + + T K P S + +S T SP S T + T
Sbjct: 1814 QSPTYTPSSPSYSPSSPSYSPT--SPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTS 1871
Query: 250 PARAIMQVKHQ-RWPKPPELSPIYLPVSPV-MPVQPLTSLTL-TQTASGPETSPASDNLS 420
P + + PK SP Y P SPV P P S T T + + P+ SP S S
Sbjct: 1872 PKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYS 1931
Query: 421 VPS 429
S
Sbjct: 1932 PTS 1934
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,431,277
Number of Sequences: 237096
Number of extensions: 2111549
Number of successful extensions: 7255
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7247
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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