Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30c07
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    38   0.002
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    27   1.9  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    27   3.3  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   5.7  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    25   7.6  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    25   7.6  
SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces pombe...    25   10.0 
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    25   10.0 

>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 25/82 (30%), Positives = 40/82 (48%)
 Frame = +2

Query: 395 YTYEQGFKLSNTFAANLRRKFQVRDGDVVAVMLPNIPDFPLVTMGILEAGGIITSINPIY 574
           YTY Q  + SN  A +L +   +  GDVV V      D  +  MG+L+AG   + I+P Y
Sbjct: 313 YTYRQIDESSNILAHHLVKN-GIERGDVVMVYAYRGVDLVVAVMGVLKAGATFSVIDPAY 371

Query: 575 TAHEVQRQLVLSEAKIVVTLPE 640
                   L +++ + +V L +
Sbjct: 372 PPARQIIYLSVAKPRALVVLED 393


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = +2

Query: 470 GDVVAVMLPNIPDFPLVTMGILEAGGIITSINPIYTAHEVQRQLVLSEAKIVVTLPETVA 649
           G ++ + + +IP    +  G+    G I+ + P+Y+A  +Q + +   A+  + LPE++ 
Sbjct: 160 GKIIKIAV-HIPTKEEILSGLDAFRGDISQLPPLYSALHIQGKRLYEYAREGIPLPESIK 218

Query: 650 IIKEACK 670
                C+
Sbjct: 219 ARSMHCE 225


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = +2

Query: 221 VQSSKLIRKQSVWSADNV-----ISSPYRDVEIPNSTLYEYVWKNLERWPERT 364
           + S+++I+   +   D +     ISSP  DVE  NST      KNL   P+R+
Sbjct: 166 ISSNRIIKSPGIKEDDYMHRGRSISSPMIDVEHINSTAVPSKTKNLPEKPKRS 218


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 230 SKLIRKQSVWSADNVISSPYRDVEIPNSTLYEYVWKNLERWPE 358
           SK   K+ +WS  +++S   R+    NST  E + K   +WP+
Sbjct: 383 SKKRSKRVLWSLKHIVSPGNREKHSLNST-PESIMKKDTKWPQ 424


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/56 (19%), Positives = 27/56 (48%)
 Frame = +2

Query: 461  VRDGDVVAVMLPNIPDFPLVTMGILEAGGIITSINPIYTAHEVQRQLVLSEAKIVV 628
            ++  DVVAV +    D+  + +G+L  G     +    + +  +  L+ +  K+++
Sbjct: 1802 IKKNDVVAVFIDKSLDYYSLMLGVLRIGAFFFPLEHCSSLNFAKENLLRTNVKLLI 1857


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 197 SKNFIKRWVQSSKLIRKQSVWSADNVISSPYRDVEIPNST 316
           SKN+IK+ +Q    +       + NV+  P R +++P  +
Sbjct: 123 SKNYIKKSLQEIVYLTNMQPNVSWNVLQEPTRGIKVPKES 162


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 227 FEPIFL*NSSTTFSRLCSSDHVKQI 153
           F P+ L NSST  S+ C S +V  +
Sbjct: 496 FGPLLLGNSSTDLSKSCPSGNVNDL 520


>SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = +1

Query: 175 EQSLENVVEEFHKKMGSKF 231
           E+S + V++EF +K+G+K+
Sbjct: 184 EESYKKVIDEFDEKVGAKY 202


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 597 NLYYPKPKSWLHCRRQW 647
           +LY   PK WL   RQW
Sbjct: 82  DLYRDSPKIWLRRERQW 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,275
Number of Sequences: 5004
Number of extensions: 64361
Number of successful extensions: 179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)