Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30c07
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   4.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   6.1  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   6.1  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   6.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   6.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.1  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 457 PSPRWRRRGCDATKHPRFSPC 519
           PS  W   G  A +H ++ PC
Sbjct: 197 PSVEWDILGVPAERHKKYYPC 217


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 603 YYPKPKSWLHCRR 641
           YYP+ K WL+  R
Sbjct: 723 YYPRRKEWLYLHR 735


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 345 RDGPRGLWRSAPPQAVGT 398
           RDGP  +  S+PP+  GT
Sbjct: 127 RDGPPSVSLSSPPREPGT 144


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 675 AILQASFIMATVSGNVTTILA 613
           AIL   F +ATV GN   ILA
Sbjct: 49  AILLFLFSVATVFGNTLVILA 69


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 607 IRSQNRGYIAGDS 645
           ++   RGY+AGDS
Sbjct: 317 VKELRRGYVAGDS 329


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 607 IRSQNRGYIAGDS 645
           ++   RGY+AGDS
Sbjct: 28  VKELRRGYVAGDS 40


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 607 IRSQNRGYIAGDS 645
           ++   RGY+AGDS
Sbjct: 260 VKELRRGYVAGDS 272


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 568 RVYRCYNASSF*YSHGHKGKIWD 500
           RV RCY++ S   S   + K WD
Sbjct: 241 RVTRCYSSDSAVLSDEDQTKGWD 263


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 607 IRSQNRGYIAGDS 645
           ++   RGY+AGDS
Sbjct: 317 VKELRRGYVAGDS 329


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 58  FLLQYCIILILYVFY 102
           F   YCI +IL ++Y
Sbjct: 216 FTFSYCIPMILIIYY 230


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 543 PASNIPMVTRGKSGMFGSITATTSPSRTWN 454
           PA+ I  +T   +    + T TT+P+ T N
Sbjct: 654 PATTITTITTTTTTTTTTTTTTTTPNTTQN 683


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,531
Number of Sequences: 438
Number of extensions: 4801
Number of successful extensions: 19
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)