Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30b20
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...    28   1.5  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    28   1.5  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   7.9  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 198 FIPGRLLRAWHRCKLRYSRNCQR 130
           F+P  LL+A+H+C+ R +R  ++
Sbjct: 63  FVPQPLLKAFHKCQARLTRELEK 85


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 212 RTTLTCNNLEH--LQ*VVSSWKSKNFMT*LINWAWKKLK 322
           +  L CN LE+     V SS++ +NF+   I+ AWK L+
Sbjct: 667 KKALECNKLENRVYDLVRSSYEQRNFLIKKISHAWKALQ 705


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
 Frame = +1

Query: 19  ERNMFRLETNSFEH*TYTME--KNNVNLTSEEESQCSNDSLTVPGVSEFA-----PMPGT 177
           +RN  R    S    TY  E  + N+N  +     C+N + +V  + E+       MP T
Sbjct: 119 KRNQSRKNQMSNNSTTYHRETKRRNINAEASTSDNCNNSNTSVDPMDEYLVTAEYTMPST 178

Query: 178 QEPS 189
            E S
Sbjct: 179 SEQS 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,356
Number of Sequences: 5004
Number of extensions: 56453
Number of successful extensions: 155
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)