Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30b20
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0498 - 10973243-10973345,10973850-10973882,10974104-109741...    34   0.13 
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536...    29   3.6  
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489...    28   6.2  

>02_02_0498 -
           10973243-10973345,10973850-10973882,10974104-10974166,
           10975934-10976004,10976703-10976789,10976870-10976983,
           10977395-10977508,10977784-10977844,10978608-10978923,
           10979031-10979721,10979948-10980073,10980180-10980247,
           10980314-10980449,10981109-10981238,10981266-10981382,
           10981614-10981763,10982158-10982266,10982584-10982701,
           10984143-10984168,10984219-10984256,10986267-10986373
          Length = 925

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 97  TSEEESQCSNDSLTVPGVSEFAPMPGTQEPSWNEG 201
           TS  ES  + D + +P +S   P+P T +PS ++G
Sbjct: 516 TSNHESSTARDDVQMPSLSNSVPIPATSQPSEHDG 550


>03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,
            5368467-5368577,5368997-5369068,5369719-5369737,
            5369838-5371142,5371317-5371397,5372441-5372604,
            5373363-5373466,5373537-5373628,5374079-5374216,
            5374370-5374426,5374820-5375046
          Length = 1713

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 234  LLHVSVVLFCETFIPGRLLRAWHRCKLR 151
            L +VSV L C+T I  R   +W  CKL+
Sbjct: 944  LCNVSVQLLCDTIIYDRKYSSWISCKLQ 971


>02_03_0307 +
           17546263-17546299,17546522-17548018,17548859-17548949,
           17549054-17549621,17550591-17550670,17550993-17551077,
           17551172-17551263,17551355-17551423,17551587-17551655,
           17552217-17552510,17552761-17552797,17552883-17552972,
           17553520-17553585,17553704-17553818,17553902-17553940,
           17554519-17554700
          Length = 1136

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 103 EEESQCSNDSLTVPGVSEFAPMPGTQEPSWNE 198
           EE + C+ DS   P VSE       QEPS  E
Sbjct: 89  EECASCTQDSTVSPPVSECGDRTAQQEPSTQE 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,646,756
Number of Sequences: 37544
Number of extensions: 319876
Number of successful extensions: 764
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)