Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30b20
         (701 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC094005-1|AAH94005.1|  116|Homo sapiens lin-52 homolog (C. eleg...    71   5e-12
BC094003-1|AAH94003.1|  116|Homo sapiens lin-52 homolog (C. eleg...    71   5e-12
Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.            31   5.3  

>BC094005-1|AAH94005.1|  116|Homo sapiens lin-52 homolog (C.
           elegans) protein.
          Length = 116

 Score = 70.5 bits (165), Expect = 5e-12
 Identities = 35/81 (43%), Positives = 54/81 (66%), Gaps = 4/81 (4%)
 Frame = +1

Query: 139 VPGVSEFAPM---PGTQEP-SWNEGLTKQDYTYMQQLGTLTVSGLIMEVKKLHDLAYQLG 306
           +PGV+EFA     P T  P  W   + + D   +++LG+LT + L+ +V+ L +LAYQLG
Sbjct: 36  LPGVAEFAASFKSPITSSPPKWMAEIERDDIDMLKELGSLTTANLMEKVRGLQNLAYQLG 95

Query: 307 LEEAKEMTRGKYLNIFASKRQ 369
           L+E++EMTRGK+LNI    ++
Sbjct: 96  LDESREMTRGKFLNILEKPKK 116


>BC094003-1|AAH94003.1|  116|Homo sapiens lin-52 homolog (C.
           elegans) protein.
          Length = 116

 Score = 70.5 bits (165), Expect = 5e-12
 Identities = 35/81 (43%), Positives = 54/81 (66%), Gaps = 4/81 (4%)
 Frame = +1

Query: 139 VPGVSEFAPM---PGTQEP-SWNEGLTKQDYTYMQQLGTLTVSGLIMEVKKLHDLAYQLG 306
           +PGV+EFA     P T  P  W   + + D   +++LG+LT + L+ +V+ L +LAYQLG
Sbjct: 36  LPGVAEFAASFKSPITSSPPKWMAEIERDDIDMLKELGSLTTANLMEKVRGLQNLAYQLG 95

Query: 307 LEEAKEMTRGKYLNIFASKRQ 369
           L+E++EMTRGK+LNI    ++
Sbjct: 96  LDESREMTRGKFLNILEKPKK 116


>Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.
          Length = 3570

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +1

Query: 70  TMEKNNVNLTSEEESQCSNDSLTVPGVSEFAPMPGTQEPSWNEGLTKQDYTYMQQLGTLT 249
           T E      T+ +    +    + PG++   P   T  P+ +EGLT   YT    LGT T
Sbjct: 289 TTELETATTTTTQALFSTPQPTSSPGLTRAPPASTTAVPTLSEGLTSPRYT--STLGTAT 346

Query: 250 VSG 258
             G
Sbjct: 347 TGG 349


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,183,431
Number of Sequences: 237096
Number of extensions: 1914822
Number of successful extensions: 3873
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3873
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)