Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30b18
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0231 - 28547468-28547636,28547767-28547839,28548382-285484...    29   3.3  
05_07_0191 - 28303642-28303952,28304044-28304149,28304926-28305654     29   4.4  
04_04_0096 - 22777684-22777797,22778668-22779047,22779162-227793...    29   4.4  
01_06_0849 + 32433429-32433743,32433840-32434021,32434235-324343...    29   4.4  
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769...    28   5.8  
03_05_1156 - 30814037-30814190,30814277-30815166                       28   5.8  
01_06_1623 - 38716606-38717424                                         28   5.8  

>05_07_0231 -
           28547468-28547636,28547767-28547839,28548382-28548463,
           28548880-28548970,28549042-28549118,28549493-28549534,
           28550101-28550108,28550404-28550534,28551358-28551385,
           28551580-28551689,28551843-28551988,28552670-28552711,
           28552824-28552832,28552888-28553032,28553596-28553687
          Length = 414

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 451 QVTLKPIGRDNDDLVSTVLLHLPQP 525
           +V LKP+   + DL++TVLL LP P
Sbjct: 63  RVMLKPLEDPHVDLIATVLLQLPLP 87


>05_07_0191 - 28303642-28303952,28304044-28304149,28304926-28305654
          Length = 381

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +1

Query: 337 IYLPLWHSSKPPLPVKLWGIEVVSGNAVNWLECVARGQQVTLKPIG 474
           + LPL    KP  P +L  +E   G  +NW      G   T + IG
Sbjct: 234 VALPLSTDHKPDRPDELERVEAAGGRVINWNGYRVLGVLATSRSIG 279


>04_04_0096 -
           22777684-22777797,22778668-22779047,22779162-22779373,
           22780119-22780561
          Length = 382

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +1

Query: 124 LQQDYRGVNIAVYALATAGLAISVHKIRPVSKFSKASKVPDHFIRNHEPLKGLYAGVQHS 303
           L  D+RG    V  +AT+GL +  H I  V +  +   V DH     + +  L    +++
Sbjct: 218 LVPDFRGDPACVEKVATSGLHVFAHNIETVEELQR--NVRDHRANFKQSIDVLKLAKEYA 275

Query: 304 PVRVL 318
           P   L
Sbjct: 276 PAGTL 280


>01_06_0849 +
           32433429-32433743,32433840-32434021,32434235-32434310,
           32434413-32434570,32435567-32435738,32435817-32435927,
           32436197-32436280
          Length = 365

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 124 LQQDYRGVNIAVYALATAGLAISVHKIRPVSKFSKASKVP 243
           L  D+RG   AV ALA +GL +  H I  V    +  + P
Sbjct: 202 LTSDFRGDLEAVSALANSGLDVFAHNIETVRSLQRIVRDP 241


>12_01_0831 -
           7688342-7688772,7690678-7692610,7693142-7693915,
           7694019-7694142,7696084-7696189,7696346-7696532
          Length = 1184

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 468 WL*CHLLAPSNTFQP-IDCIPTNYFNSPQLN 379
           WL  H  AP+N F+P +  +PT  FN+ + N
Sbjct: 395 WLMDHRKAPNNMFRPLLSSVPTTTFNAGKGN 425


>03_05_1156 - 30814037-30814190,30814277-30815166
          Length = 347

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 479 IMMI*FLLYYC-IYLSLRVKMFKHWILVKNWWSLDLQ 586
           I+M  F +Y   IY   R KM  +W+L +    +DL+
Sbjct: 250 IIMAQFFMYLAEIYTERRQKMLANWVLTRKMTKMDLE 286


>01_06_1623 - 38716606-38717424
          Length = 272

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 283 YAGVQHSPVRVLVNHKAPIYLP 348
           YA    SPVR++VN+K+P  +P
Sbjct: 196 YAAPDMSPVRIVVNNKSPSEIP 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.136    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,415,793
Number of Sequences: 37544
Number of extensions: 373278
Number of successful extensions: 838
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)