Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30b18
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81521-1|CAB04226.1|  319|Caenorhabditis elegans Hypothetical pr...    31   0.55 
Z74034-2|CAE17843.1|  323|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z81521-1|CAB04226.1|  319|Caenorhabditis elegans Hypothetical
           protein F32A11.1 protein.
          Length = 319

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 36/161 (22%), Positives = 71/161 (44%), Gaps = 8/161 (4%)
 Frame = +1

Query: 154 AVYALATAGLAISVHKIRPVSKFSKASKVPDHFIRNHEPLKGLYAGVQHSPVRVLVNHKA 333
           A+  +  AG+ I +   R   KF   +++P  FIR    LKG    V  S   + V H+ 
Sbjct: 44  AIVGVGLAGVIIYLRNSRLFHKFQHVNQIPKDFIRKELELKGRVREVLPSG-ELRVEHEP 102

Query: 334 PIYLPLWHSSKPP----LPVKLWGIEVVSGNAVNWLECVARGQQVTLKPIG----RDNDD 489
            + +P     K      L ++L G+E+         + +A+  ++T KP+     +D + 
Sbjct: 103 IMKIPFLPKRKNVDTGLLNLRLAGVELSQSGQ----QFLAKDLRLTNKPVTFTVIKDVEG 158

Query: 490 LVSTVLLHLPQPKSKDVQTLDIGKKLVELGFAKASFPKELK 612
               V   +   ++   +T ++  ++V  G+A+   P ++K
Sbjct: 159 APDAVDADVTVKRTAFGRT-NLNLEVVRRGYARVPAPDQVK 198


>Z74034-2|CAE17843.1|  323|Caenorhabditis elegans Hypothetical
           protein F43A11.4 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +1

Query: 271 LKGLYAGVQHSPVRVLVNHKAPIYLPLWHSS 363
           +  LYAG+Q+    + +N    +Y+P+++S+
Sbjct: 92  VNSLYAGLQYCGFLIAINRFCAMYIPMFYST 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.136    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,277,411
Number of Sequences: 27780
Number of extensions: 336106
Number of successful extensions: 832
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)