Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30b18
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   6.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   7.9  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 40  LRNYENFVSVDIKMSQKEGGIFYNM 114
           LR  EN+ +V++   +K+   F+NM
Sbjct: 438 LRVNENYKTVNLAAEKKDKNSFFNM 462


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 40  LRNYENFVSVDIKMSQKEGGIFYNM 114
           LR  EN+ +V++   +K+   F+NM
Sbjct: 438 LRVNENYKTVNLAAEKKDKNSFFNM 462


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -2

Query: 136 NLVVINIACCKIFLLL 89
           N+ V+N+A C  F+++
Sbjct: 84  NMFVVNLAICDFFMMI 99


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 151 IAVYALATAGLAISVHKIRPVSK 219
           I ++  +  G ++S+H I PV++
Sbjct: 247 ITIFGESAGGSSVSLHLISPVTR 269


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 151 IAVYALATAGLAISVHKIRPVSK 219
           I ++  +  G ++S+H I PV++
Sbjct: 247 ITIFGESAGGSSVSLHLISPVTR 269


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 7   IENIDELIYESLRNYENFVSVDIKMSQKEGGIF-YNMQYLLQQDYRGVNIAVYALATAGL 183
           + N  ++IYE      +F S + + +  + G + Y M YLL  D  G    V  +   G+
Sbjct: 25  LTNSLKVIYEWKYIDYDFGSDEKRQAAIQSGDYNYTMNYLLDTDQWGDKTFVIIMKFNGV 84

Query: 184 AISVHKI 204
             S++ I
Sbjct: 85  PSSLNVI 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.136    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,923
Number of Sequences: 438
Number of extensions: 4258
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)