Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30b14
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0166 - 20508656-20509092,20509282-20509372 33 0.24
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 31 0.74
04_03_0811 - 19909128-19912214 30 2.2
12_02_0304 + 17112677-17113195 29 3.9
02_01_0377 + 2728892-2729187,2729483-2729544,2730516-2730570,273... 29 3.9
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 5.2
07_03_0951 - 22836167-22836358,22836455-22837213 29 5.2
06_03_1249 - 28688997-28689248,28689469-28689533,28690016-286900... 29 5.2
03_01_0014 + 113638-113754,113836-113950,114570-114835,115365-11... 29 5.2
02_02_0549 + 11410129-11412180 29 5.2
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 29 5.2
03_06_0203 - 32337928-32338025,32338745-32338820,32338905-323389... 28 6.9
01_02_0007 + 10132380-10133201 28 6.9
01_01_0082 + 625198-625719 28 6.9
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 28 9.1
05_06_0026 - 25024807-25025300,25025432-25025495,25025567-250256... 28 9.1
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 9.1
01_07_0385 - 43212580-43213142,43213234-43213612 28 9.1
01_06_1141 + 34845834-34845931,34846110-34846198,34846535-348466... 28 9.1
>02_04_0166 - 20508656-20509092,20509282-20509372
Length = 175
Score = 33.1 bits (72), Expect = 0.24
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +1
Query: 520 GSTLC-VDGSNGRSTCRGDSGGPLTIGSGGXR-QLIGITSFGSAQGCQRGFPAA 675
G+TL V GS+ R + RG SGG G GG R Q+ + + G+A RG+ AA
Sbjct: 25 GATLGGVRGSHARRSKRGISGGAGCGGGGGARGQVTAVGASGAAAEDARGYDAA 78
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 31.5 bits (68), Expect = 0.74
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -3
Query: 137 ERVLVSKEAPQIEVLPFVSAITSPARWG*APALAAEPPTILV 12
E + AP LPF S + + AR G APAL+A P LV
Sbjct: 2 EATAAAAAAPARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43
>04_03_0811 - 19909128-19912214
Length = 1028
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 133 GCWSVRKLRRLKFCHS*VRSQVQQDGGEHQRWRQ 32
GCWS+R+L L+ HS SQ + GE WR+
Sbjct: 962 GCWSLRRLPLLRQEHS---SQAVEVSGERAWWRK 992
>12_02_0304 + 17112677-17113195
Length = 172
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 173 PRLVSSPSLLAQLTSSPEAPGSPPPV 250
PR SPS+ A+ T +P SPPPV
Sbjct: 42 PRRAPSPSVTAEPTPAPVIAPSPPPV 67
>02_01_0377 +
2728892-2729187,2729483-2729544,2730516-2730570,
2730784-2730858,2730980-2731054,2731155-2731202,
2731548-2732357,2732450-2732498,2733157-2733266,
2733381-2733488,2733920-2733980
Length = 582
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 638 PNDVIPIS*RXPPLPMVRGPPESPLQVLRPLEP 540
P +IP+ P P V PPE +Q++RP+ P
Sbjct: 517 PPVLIPVPGAGPLGPFVPAPPEVVMQMMRPVMP 549
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 106 CGASLLTNTRSVTAAHCWRSR 168
CG+ ++T TRSVT A C S+
Sbjct: 275 CGSRIITTTRSVTVASCCSSQ 295
>07_03_0951 - 22836167-22836358,22836455-22837213
Length = 316
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 432 SQQPTKTPSQPSGHY*RRLRPDFWK 506
S PT TPSQPS Y RR R + W+
Sbjct: 63 SPPPTPTPSQPSSSYHRR-RRESWE 86
>06_03_1249 -
28688997-28689248,28689469-28689533,28690016-28690093,
28691480-28691824,28693314-28693510,28695601-28696601
Length = 645
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 701 ELKDVTLAKAAGKPLWQPWADPNDVIPIS*RXPPLPMVRGPPESP 567
E D L + PL + DP DV+ + PP P GPP+ P
Sbjct: 143 ECVDTWLDAHSTCPLCRSRVDPEDVLLLP--EPPKPSTTGPPDPP 185
>03_01_0014 +
113638-113754,113836-113950,114570-114835,115365-115575,
115915-115979,118723-118930,119457-119566,119663-119913,
120250-120356,120442-120509,120624-120701,121070-121198,
121341-121481,122297-122344,122648-122743,124071-124183,
124441-124591,124745-124818,124913-125072,125356-125454,
125532-125618,125761-125907
Length = 946
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/39 (28%), Positives = 15/39 (38%)
Frame = -1
Query: 454 GVFVGCWLPKQHRKFCRSRQPRPKYQQSCCFHWLG*CAE 338
G + G + + RK+ P CC HW C E
Sbjct: 149 GTYTGIFRQELQRKYHLKNSPCDPCMVHCCLHWCANCQE 187
>02_02_0549 + 11410129-11412180
Length = 683
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 193 LAFGTANIFSGGTRVTTSSVHMHGSYNMNNLHN-DVAVINHNHVGFNNNIQRINLASGSN 369
LA +F+G V ++S H+ + ++ + N D IN+NHVG N N +LAS N
Sbjct: 129 LANNYMGLFNGTGSVGSASNHLF-AVELDTIQNPDFRDINNNHVGININ----DLASRDN 183
Query: 370 N 372
+
Sbjct: 184 D 184
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -3
Query: 662 PLWQPWADPNDVIPIS*RXPPLPMVRGPPESPLQVLRP 549
P + P A P + + + PP+P + PP P Q P
Sbjct: 322 PYYAPPAQPTETMHQQYQAPPVPQPQAPPAPPQQYQTP 359
>03_06_0203 -
32337928-32338025,32338745-32338820,32338905-32338971,
32339181-32339275,32340062-32340151,32340293-32340340,
32340764-32341069
Length = 259
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 173 PRLVSSPSLLAQLTSSPEAPGSPPP 247
PRLVSSP+ L + P+ P P P
Sbjct: 49 PRLVSSPAKLTDDATPPQPPPQPQP 73
>01_02_0007 + 10132380-10133201
Length = 273
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -3
Query: 674 AAGKPLWQPWADPNDVIPI---S*RXPPLPMVRGPPESPLQVLRPLEPST 534
A +PL QP DPN+ P+ PP P+ + P SP Q L +P+T
Sbjct: 183 APPQPLPQP--DPNNPQPLPQPDPNAPPQPLPQPDPNSPPQPLPQPDPNT 230
>01_01_0082 + 625198-625719
Length = 173
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -3
Query: 638 PNDVIPIS*RXPPLPMVRGPPESPLQVL--RPLEPSTQRVEP 519
P DV+P PP P V PP SP V P PST P
Sbjct: 55 PPDVLPTPVYYPPPPPVYYPPPSPPPVAYPPPTTPSTNCPPP 96
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 185 SSPSLLAQLTSSPEAPGSPPP 247
SS S + +SSP AP SPPP
Sbjct: 7 SSTSSSSSASSSPRAPSSPPP 27
>05_06_0026 -
25024807-25025300,25025432-25025495,25025567-25025662,
25025719-25025929,25026616-25026690,25026820-25027037
Length = 385
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Frame = -3
Query: 632 DVIPIS*RXPPLPMVRGPPESPLQV------LRPLEPSTQRVEPM 516
+ PIS + PP P+ PP P+QV PL P+ VEP+
Sbjct: 2 EATPISVK-PPSPVAAAPPPPPVQVPVPPPPPPPLPPAAAAVEPL 45
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.9 bits (59), Expect = 9.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 58 GGEHQRWRQNHPQSW 14
GG HQR R +HP +W
Sbjct: 559 GGHHQRRRHHHPPAW 573
>01_07_0385 - 43212580-43213142,43213234-43213612
Length = 313
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 246 GGGDPGASGEDVSCAKSEGELTSLGIPGPP--AVSSGHR 136
GGGD GAS VS A + +G+ PP V +G R
Sbjct: 182 GGGDGGASSVVVSAAAAAARRLPVGVRKPPLHVVVTGER 220
>01_06_1141 +
34845834-34845931,34846110-34846198,34846535-34846686,
34847473-34847583,34847702-34847818,34847989-34848156,
34848563-34848703
Length = 291
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -3
Query: 602 PLPMVRGPPE--SPLQVLRPLEPSTQRVEPMIRVFP 501
PLP+VR PP + Q L L Q++ P ++V P
Sbjct: 19 PLPLVRPPPSPGAAGQYLAELLQEQQKIGPFVQVLP 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,152,655
Number of Sequences: 37544
Number of extensions: 419894
Number of successful extensions: 2013
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2006
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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