Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30b09
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p... 288 5e-79
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.97
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 28 1.7
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 3.0
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 27 3.9
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy... 26 5.2
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.0
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 9.0
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 25 9.0
>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 252
Score = 288 bits (707), Expect = 5e-79
Identities = 127/188 (67%), Positives = 151/188 (80%)
Frame = +1
Query: 205 TFATSASLAKRVKTFAVYRWNPDEPDKKPYTQNFEVDLDDCAPMVLDALLKIKNEVDPTL 384
T A S + +KTF +YRWNP++P+ KP Q + VDL C PMVLDAL+KIKNE DPTL
Sbjct: 10 TSANPQSQGENLKTFEIYRWNPEKPEVKPKLQKYTVDLTKCGPMVLDALIKIKNEQDPTL 69
Query: 385 TFRRSCREGVCGSCAMNIDGVNTLACISHIDQNISKPTKIYPLPHMYVVKDLVPDLTNFY 564
TFRRSCREG+CGSCAMNI+G NTLACI +I ++ +KPTKIYPLPH ++VKDLVPDLT FY
Sbjct: 70 TFRRSCREGICGSCAMNINGSNTLACICNIKKD-NKPTKIYPLPHCFIVKDLVPDLTYFY 128
Query: 565 RQYQSIEPWLQRENEAVKGKETQLLQDVEDRVKLDGLYECVLCACCSTSCPSYWWNGDKY 744
+QY+SIEPWLQ +N K+ + Q DR KLDGLYEC+LCACCSTSCPSYWWN ++Y
Sbjct: 129 KQYKSIEPWLQNDNIP---KDKEFYQSRADRAKLDGLYECILCACCSTSCPSYWWNSEEY 185
Query: 745 LGPAVLMQ 768
LGPAVLMQ
Sbjct: 186 LGPAVLMQ 193
>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 563
Score = 28.7 bits (61), Expect = 0.97
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 160 MPLLRLTTGTFGQLRTFATSASLAKRVKTFAVYRWNPDEPDKKPYTQNFEV 312
MP L+ T F + A + V+ ++Y+ P+EPD P + FE+
Sbjct: 212 MPALQRPTSFFAAVAFAALIQYYSGAVQLCSIYKKTPEEPDGWPDKRCFEI 262
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 328 APMVLDALLKIKNEVDPTLTFRRSCREGV 414
AP+VL+A+ K KN + T +SC+E +
Sbjct: 1276 APLVLEAIEKYKNALGAPDTATKSCKENL 1304
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 27.1 bits (57), Expect = 3.0
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = -1
Query: 669 IQLDAVLYVLEQLSLLTFNSFIFTLQPRLDR 577
+ D+ Y ++++S+ SF++ L+PR+D+
Sbjct: 1810 VSFDSTWYPVDEVSVHQEGSFLYELKPRIDQ 1840
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 685 VLCACCSTSCPSYWWNGDK 741
V+C C ++SC Y WN ++
Sbjct: 112 VVCGCSNSSCIVYSWNAEQ 130
>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 276
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 316 LDDCAPMVLDALLKIKNEVDPTLTFR--RSCREGVCGSCAMNID 441
L DC V++AL +D +T+R + C + + C N++
Sbjct: 23 LKDCYQQVIEALSLGIRVIDSAITYRNEKECEQAIQDFCHQNVN 66
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.4 bits (53), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 299 KISKWIWTTAHLWYWT 346
+ISK++W T L +WT
Sbjct: 91 EISKYVWDTMELKFWT 106
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 422 EPQTPSRHERLKVRVGSTSFLIFSKASNTI 333
EP TPS H LK + S FS +TI
Sbjct: 249 EPSTPSTHSDLKELLESIKSCFFSLLPSTI 278
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Frame = +1
Query: 628 TQLLQDVEDRVKLDG---LYECVLCACCSTSCPS 720
T D + RV+ D +YEC CS CP+
Sbjct: 286 THFAYDAQGRVRADTGAVIYECNSFCSCSMECPN 319
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,280,470
Number of Sequences: 5004
Number of extensions: 68193
Number of successful extensions: 221
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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