Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30b09
         (768 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L27705-1|AAA61925.1|  297|Drosophila melanogaster succinate dehy...   310   2e-84
AY118923-1|AAM50783.1|  297|Drosophila melanogaster LD23740p pro...   310   2e-84
AE013599-229|AAF57396.1|  297|Drosophila melanogaster CG3283-PA ...   310   2e-84
AY089563-1|AAL90301.1|  437|Drosophila melanogaster RE03249p pro...   286   2e-77
AE014298-2790|AAF48905.2|  437|Drosophila melanogaster CG7349-PA...   286   3e-77
AY058523-1|AAL13752.1|  816|Drosophila melanogaster LD23056p pro...    33   0.57 
AE014134-2030|AAF53069.1|  816|Drosophila melanogaster CG4713-PA...    33   0.57 
AE014296-584|AAF47730.1| 1381|Drosophila melanogaster CG12734-PA...    32   0.75 

>L27705-1|AAA61925.1|  297|Drosophila melanogaster succinate
           dehydrogenase iron-proteinsubunit protein.
          Length = 297

 Score =  310 bits (760), Expect = 2e-84
 Identities = 133/179 (74%), Positives = 153/179 (85%), Gaps = 1/179 (0%)
 Frame = +1

Query: 235 RVKTFAVYRWNPDEPDKKPYTQNFEVDLDDCAPMVLDALLKIKNEVDPTLTFRRSCREGV 414
           ++K F +YRWNPD   +KPY Q +EVDL +C PMVLDAL+KIKNE+DPTLTFRRSCREG+
Sbjct: 45  QIKKFEIYRWNPDNAGEKPYMQTYEVDLRECGPMVLDALIKIKNEMDPTLTFRRSCREGI 104

Query: 415 CGSCAMNIDGVNTLACISHIDQNISKPTKIYPLPHMYVVKDLVPDLTNFYRQYQSIEPWL 594
           CGSCAMNI G NTLACIS ID N SK  K+YPLPHMYVV+DLVPD+ NFY QY++I+PWL
Sbjct: 105 CGSCAMNIGGTNTLACISKIDINTSKSLKVYPLPHMYVVRDLVPDMNNFYEQYRNIQPWL 164

Query: 595 QRENEAVKGK-ETQLLQDVEDRVKLDGLYECVLCACCSTSCPSYWWNGDKYLGPAVLMQ 768
           QR+NEA + K + Q LQ VEDR KLDGLYEC+LCACCSTSCPSYWWN +KYLGPAVLMQ
Sbjct: 165 QRKNEAGEKKGKAQYLQSVEDRSKLDGLYECILCACCSTSCPSYWWNAEKYLGPAVLMQ 223


>AY118923-1|AAM50783.1|  297|Drosophila melanogaster LD23740p
           protein.
          Length = 297

 Score =  310 bits (760), Expect = 2e-84
 Identities = 133/179 (74%), Positives = 153/179 (85%), Gaps = 1/179 (0%)
 Frame = +1

Query: 235 RVKTFAVYRWNPDEPDKKPYTQNFEVDLDDCAPMVLDALLKIKNEVDPTLTFRRSCREGV 414
           ++K F +YRWNPD   +KPY Q +EVDL +C PMVLDAL+KIKNE+DPTLTFRRSCREG+
Sbjct: 45  QIKKFEIYRWNPDNAGEKPYMQTYEVDLRECGPMVLDALIKIKNEMDPTLTFRRSCREGI 104

Query: 415 CGSCAMNIDGVNTLACISHIDQNISKPTKIYPLPHMYVVKDLVPDLTNFYRQYQSIEPWL 594
           CGSCAMNI G NTLACIS ID N SK  K+YPLPHMYVV+DLVPD+ NFY QY++I+PWL
Sbjct: 105 CGSCAMNIGGTNTLACISKIDINTSKSLKVYPLPHMYVVRDLVPDMNNFYEQYRNIQPWL 164

Query: 595 QRENEAVKGK-ETQLLQDVEDRVKLDGLYECVLCACCSTSCPSYWWNGDKYLGPAVLMQ 768
           QR+NEA + K + Q LQ VEDR KLDGLYEC+LCACCSTSCPSYWWN +KYLGPAVLMQ
Sbjct: 165 QRKNEAGEKKGKAQYLQSVEDRSKLDGLYECILCACCSTSCPSYWWNAEKYLGPAVLMQ 223


>AE013599-229|AAF57396.1|  297|Drosophila melanogaster CG3283-PA
           protein.
          Length = 297

 Score =  310 bits (760), Expect = 2e-84
 Identities = 133/179 (74%), Positives = 153/179 (85%), Gaps = 1/179 (0%)
 Frame = +1

Query: 235 RVKTFAVYRWNPDEPDKKPYTQNFEVDLDDCAPMVLDALLKIKNEVDPTLTFRRSCREGV 414
           ++K F +YRWNPD   +KPY Q +EVDL +C PMVLDAL+KIKNE+DPTLTFRRSCREG+
Sbjct: 45  QIKKFEIYRWNPDNAGEKPYMQTYEVDLRECGPMVLDALIKIKNEMDPTLTFRRSCREGI 104

Query: 415 CGSCAMNIDGVNTLACISHIDQNISKPTKIYPLPHMYVVKDLVPDLTNFYRQYQSIEPWL 594
           CGSCAMNI G NTLACIS ID N SK  K+YPLPHMYVV+DLVPD+ NFY QY++I+PWL
Sbjct: 105 CGSCAMNIGGTNTLACISKIDINTSKSLKVYPLPHMYVVRDLVPDMNNFYEQYRNIQPWL 164

Query: 595 QRENEAVKGK-ETQLLQDVEDRVKLDGLYECVLCACCSTSCPSYWWNGDKYLGPAVLMQ 768
           QR+NEA + K + Q LQ VEDR KLDGLYEC+LCACCSTSCPSYWWN +KYLGPAVLMQ
Sbjct: 165 QRKNEAGEKKGKAQYLQSVEDRSKLDGLYECILCACCSTSCPSYWWNAEKYLGPAVLMQ 223


>AY089563-1|AAL90301.1|  437|Drosophila melanogaster RE03249p
           protein.
          Length = 437

 Score =  286 bits (702), Expect = 2e-77
 Identities = 123/179 (68%), Positives = 149/179 (83%)
 Frame = +1

Query: 232 KRVKTFAVYRWNPDEPDKKPYTQNFEVDLDDCAPMVLDALLKIKNEVDPTLTFRRSCREG 411
           +R+KTF +YRW P +   +P TQ +EVDL+ C  MVLDAL+KIKNE+DPTLTFRRSCREG
Sbjct: 185 QRLKTFEIYRWKPGD---QPQTQTYEVDLEQCGAMVLDALIKIKNEMDPTLTFRRSCREG 241

Query: 412 VCGSCAMNIDGVNTLACISHIDQNISKPTKIYPLPHMYVVKDLVPDLTNFYRQYQSIEPW 591
           +CGSCAMNI+G NTLAC+S IDQN SK  +IYPLPH+YVV+DLVPD++ FY QY+SI+PW
Sbjct: 242 ICGSCAMNINGTNTLACVSSIDQNESKCCRIYPLPHLYVVRDLVPDMSQFYDQYRSIQPW 301

Query: 592 LQRENEAVKGKETQLLQDVEDRVKLDGLYECVLCACCSTSCPSYWWNGDKYLGPAVLMQ 768
           LQR++   +    Q LQ V+DR+ LDGLYEC+LCACC TSCPSYWWN +KYLGPAVLMQ
Sbjct: 302 LQRKDLKREAGTAQYLQSVDDRLVLDGLYECILCACCQTSCPSYWWNSNKYLGPAVLMQ 360


>AE014298-2790|AAF48905.2|  437|Drosophila melanogaster CG7349-PA
           protein.
          Length = 437

 Score =  286 bits (701), Expect = 3e-77
 Identities = 123/178 (69%), Positives = 148/178 (83%)
 Frame = +1

Query: 235 RVKTFAVYRWNPDEPDKKPYTQNFEVDLDDCAPMVLDALLKIKNEVDPTLTFRRSCREGV 414
           R+KTF +YRW P +   +P TQ +EVDL+ C  MVLDAL+KIKNE+DPTLTFRRSCREG+
Sbjct: 186 RLKTFEIYRWKPGD---QPQTQTYEVDLEQCGAMVLDALIKIKNEMDPTLTFRRSCREGI 242

Query: 415 CGSCAMNIDGVNTLACISHIDQNISKPTKIYPLPHMYVVKDLVPDLTNFYRQYQSIEPWL 594
           CGSCAMNI+G NTLAC+S IDQN SK  +IYPLPH+YVV+DLVPD++ FY QY+SI+PWL
Sbjct: 243 CGSCAMNINGTNTLACVSSIDQNESKCCRIYPLPHLYVVRDLVPDMSQFYDQYRSIQPWL 302

Query: 595 QRENEAVKGKETQLLQDVEDRVKLDGLYECVLCACCSTSCPSYWWNGDKYLGPAVLMQ 768
           QR++   +    Q LQ V+DR+ LDGLYEC+LCACC TSCPSYWWN +KYLGPAVLMQ
Sbjct: 303 QRKDLKREAGTAQYLQSVDDRLVLDGLYECILCACCQTSCPSYWWNSNKYLGPAVLMQ 360


>AY058523-1|AAL13752.1|  816|Drosophila melanogaster LD23056p
           protein.
          Length = 816

 Score = 32.7 bits (71), Expect = 0.57
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +1

Query: 490 KPTKIYPLPHMYVVKDLVPDLTNFYRQYQSIEPWLQRENEAVKGKE-TQLLQDVEDRVKL 666
           +PT + P P +    +++  L     +YQS+E   + EN + K +   ++++  ED +KL
Sbjct: 345 EPTPVAPAPVLAAATNMLEALQQRLEKYQSVEAAAKAENNSGKARRFGRIVKQYEDAIKL 404


>AE014134-2030|AAF53069.1|  816|Drosophila melanogaster CG4713-PA
           protein.
          Length = 816

 Score = 32.7 bits (71), Expect = 0.57
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +1

Query: 490 KPTKIYPLPHMYVVKDLVPDLTNFYRQYQSIEPWLQRENEAVKGKE-TQLLQDVEDRVKL 666
           +PT + P P +    +++  L     +YQS+E   + EN + K +   ++++  ED +KL
Sbjct: 345 EPTPVAPAPVLAAATNMLEALQQRLEKYQSVEAAAKAENNSGKARRFGRIVKQYEDAIKL 404


>AE014296-584|AAF47730.1| 1381|Drosophila melanogaster CG12734-PA,
            isoform A protein.
          Length = 1381

 Score = 32.3 bits (70), Expect = 0.75
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 422  EPQTPSRHERLKVRVGSTSFLIFSKASNTIGAQSS 318
            EPQTP +       VG  +FL++++ + TIG  S+
Sbjct: 1304 EPQTPQKSTENNAPVGPATFLMYNRINTTIGGASN 1338


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,724,670
Number of Sequences: 53049
Number of extensions: 772075
Number of successful extensions: 2398
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2393
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3540671772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)