Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30b09
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47809-2|CAA87780.1|  298|Caenorhabditis elegans Hypothetical pr...   291   5e-79
AB008569-1|BAA23717.1|  297|Caenorhabditis elegans iron-sulfur s...   291   5e-79
S50380-1|AAB24366.1|  161|Caenorhabditis elegans succinate-ubiqu...   203   9e-53
Z68227-17|CAA92508.2|  348|Caenorhabditis elegans Hypothetical p...    28   8.4  

>Z47809-2|CAA87780.1|  298|Caenorhabditis elegans Hypothetical
           protein F42A8.2 protein.
          Length = 298

 Score =  291 bits (713), Expect = 5e-79
 Identities = 127/186 (68%), Positives = 147/186 (79%)
 Frame = +1

Query: 211 ATSASLAKRVKTFAVYRWNPDEPDKKPYTQNFEVDLDDCAPMVLDALLKIKNEVDPTLTF 390
           A +     R+KTF +YR+NP+ P  KP  Q F+VDLD C  M+LDAL+KIKNEVDPTLTF
Sbjct: 44  AKTKKTGNRIKTFEIYRFNPEAPGAKPTVQKFDVDLDQCGTMILDALIKIKNEVDPTLTF 103

Query: 391 RRSCREGVCGSCAMNIDGVNTLACISHIDQNISKPTKIYPLPHMYVVKDLVPDLTNFYRQ 570
           RRSCREG+CGSCAMNI G NTLACI  ID + SK TKIYPLPHM+VVKDLVPD+  FY Q
Sbjct: 104 RRSCREGICGSCAMNIGGQNTLACICKIDSDTSKSTKIYPLPHMFVVKDLVPDMNLFYAQ 163

Query: 571 YQSIEPWLQRENEAVKGKETQLLQDVEDRVKLDGLYECVLCACCSTSCPSYWWNGDKYLG 750
           Y SI+PW+Q++     G E Q+ Q V +R +LDGLYEC+LCACCSTSCPSYWWN DKYLG
Sbjct: 164 YASIQPWIQKKTPLTLG-EKQMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLG 222

Query: 751 PAVLMQ 768
           PAVLMQ
Sbjct: 223 PAVLMQ 228


>AB008569-1|BAA23717.1|  297|Caenorhabditis elegans iron-sulfur
           subunit of mitochondrialsuccinate dehydrogenase protein.
          Length = 297

 Score =  291 bits (713), Expect = 5e-79
 Identities = 127/186 (68%), Positives = 147/186 (79%)
 Frame = +1

Query: 211 ATSASLAKRVKTFAVYRWNPDEPDKKPYTQNFEVDLDDCAPMVLDALLKIKNEVDPTLTF 390
           A +     R+KTF +YR+NP+ P  KP  Q F+VDLD C  M+LDAL+KIKNEVDPTLTF
Sbjct: 43  AKTKKTGNRIKTFEIYRFNPEAPGAKPTVQKFDVDLDQCGTMILDALIKIKNEVDPTLTF 102

Query: 391 RRSCREGVCGSCAMNIDGVNTLACISHIDQNISKPTKIYPLPHMYVVKDLVPDLTNFYRQ 570
           RRSCREG+CGSCAMNI G NTLACI  ID + SK TKIYPLPHM+VVKDLVPD+  FY Q
Sbjct: 103 RRSCREGICGSCAMNIGGQNTLACICKIDSDTSKSTKIYPLPHMFVVKDLVPDMNLFYAQ 162

Query: 571 YQSIEPWLQRENEAVKGKETQLLQDVEDRVKLDGLYECVLCACCSTSCPSYWWNGDKYLG 750
           Y SI+PW+Q++     G E Q+ Q V +R +LDGLYEC+LCACCSTSCPSYWWN DKYLG
Sbjct: 163 YASIQPWIQKKTPLTLG-EKQMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLG 221

Query: 751 PAVLMQ 768
           PAVLMQ
Sbjct: 222 PAVLMQ 227


>S50380-1|AAB24366.1|  161|Caenorhabditis elegans
           succinate-ubiquinone oxidoreductasecomplex II
           iron-sulfur subunit protein.
          Length = 161

 Score =  203 bits (496), Expect = 9e-53
 Identities = 88/123 (71%), Positives = 100/123 (81%)
 Frame = +1

Query: 400 CREGVCGSCAMNIDGVNTLACISHIDQNISKPTKIYPLPHMYVVKDLVPDLTNFYRQYQS 579
           CREG+CGSCAMNI G NTLACI  ID + SK TKIYPLPHM+VVKDLVPD+  FY QY S
Sbjct: 1   CREGMCGSCAMNIGGQNTLACICKIDSDTSKSTKIYPLPHMFVVKDLVPDMNLFYAQYAS 60

Query: 580 IEPWLQRENEAVKGKETQLLQDVEDRVKLDGLYECVLCACCSTSCPSYWWNGDKYLGPAV 759
           I+PW+Q++     G E Q+ Q V +R +LDGLYEC+LCACCSTSCPSYWWN DKYLGPAV
Sbjct: 61  IQPWIQKKTPLTLG-EKQMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAV 119

Query: 760 LMQ 768
           LMQ
Sbjct: 120 LMQ 122


>Z68227-17|CAA92508.2|  348|Caenorhabditis elegans Hypothetical
           protein F49C12.3 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 570 LPVKVGQIGDQVFD-DVHVR*RINLRRLGNVLIDMADAGQSVDAVDIHRTRTTNAL 406
           +P  V +I    FD D H++       + N+LID+    +S++AV  +R   T  L
Sbjct: 66  IPNAVSRIVAIAFDKDAHLKLHEKYPNIPNILIDLTPLKKSIEAVQENREYLTYGL 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,219,375
Number of Sequences: 27780
Number of extensions: 390187
Number of successful extensions: 1227
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)