Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30b09
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.77 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    24   1.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   7.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.5  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +1

Query: 463 ISHIDQNISKPTKIYPLPHMYVVKDLVPDLTNFYRQYQSIEPWLQRENEAVKGKETQLLQ 642
           +  + Q   K +K+  +    +++ L+ DL    +Q +S+E W    N   KGK    L 
Sbjct: 344 LKFLKQKYVKNSKLEKVIKHDILRMLIIDLRK--KQLKSLEDWENEMNIITKGKP---LI 398

Query: 643 DVEDRVKLDG 672
            VE+ + L+G
Sbjct: 399 RVENIIDLEG 408


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +2

Query: 251 QSIDGTPMSPTRNLIRKISKWI----WTTAHLWYW 343
           + + G P+S    LIR I+ W+    WT A ++ W
Sbjct: 156 KGLSGKPLSINGALIRIIAIWLFSLGWTIAPMFGW 190


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +2

Query: 251 QSIDGTPMSPTRNLIRKISKWI----WTTAHLWYW 343
           + + G P+S    LIR I+ W+    WT A ++ W
Sbjct: 32  KGLSGKPLSINGALIRIIAIWLFSLGWTIAPMFGW 66


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 232 KRVKTFAVYRWNPDEPDKKPYTQNFEVDL 318
           +R KTFA    N +E  +KP  Q    +L
Sbjct: 130 RRKKTFAAREDNDEEEAQKPKEQYIPPEL 158


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +2

Query: 440 TASTLWPASAISIKTFPSRRRFILYLTCTSSKTW 541
           T  TLW   + + +   +   FIL+L C     W
Sbjct: 261 TLMTLWLEPSSTERMIIANLNFILHLFCLLDVQW 294


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 374 STSFLIFSKASNTIGAQSSKSTSKFCV 294
           STS ++ S++      QSS +TSK  V
Sbjct: 253 STSRIVISESLKHFTIQSSVTTSKMMV 279


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,187
Number of Sequences: 438
Number of extensions: 5445
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)