Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30b08
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0928 + 26024589-26024645,26024900-26024956,26025464-260257...   117   1e-26
02_05_0759 + 31545473-31546204                                         68   7e-12
03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423     31   0.93 
03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499     30   2.1  
08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,304...    29   3.7  
02_04_0538 + 23739830-23740126,23740205-23740261,23740344-237404...    29   3.7  
03_02_0358 + 7784067-7784128,7784239-7785040,7785513-7785617,778...    28   6.5  
10_03_0019 - 7123502-7123673,7124145-7124226,7124228-7124394,712...    28   8.6  

>06_03_0928 +
           26024589-26024645,26024900-26024956,26025464-26025707,
           26026126-26026238,26026675-26026761,26026843-26026962
          Length = 225

 Score =  117 bits (281), Expect = 1e-26
 Identities = 62/192 (32%), Positives = 106/192 (55%), Gaps = 2/192 (1%)
 Frame = +3

Query: 108 RSLSTSVA--SAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELGQFQQSIKTDA 281
           R  ++ VA  + + +K P  ++G  G YASALF  A+K   LD VE E+    ++ K   
Sbjct: 23  RGFASQVAKPTGKDIKVPEALYGGTGNYASALFLTAAKANLLDKVETEIRDVVEASKKSP 82

Query: 282 KLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLDKLEAVINAFKIMM 461
              +FI + ++ +  +V A+  +  +   S  T N L +LA+NGRL  ++ +   F  + 
Sbjct: 83  LFSQFIKDLSVPKETRVKAITEIFAEAGFSDVTKNFLAVLADNGRLKHIDRIAERFVDLT 142

Query: 462 AAHRGEVTCEVVTAKPLDQAQRQNLEAALKKFLKGNETLQLTAKVDPSLIGGMVVSIGDK 641
            AH+GEV   V T  PL + + + L+  L+  L  N+T+ +  K+D S++GG+V+  G K
Sbjct: 143 MAHKGEVKVLVRTVIPLPEKEEKELKETLQDILGKNKTILIEQKIDYSIMGGLVIQFGQK 202

Query: 642 YVDMSVASKVKK 677
             DMS+ ++ K+
Sbjct: 203 VFDMSIKTRAKQ 214


>02_05_0759 + 31545473-31546204
          Length = 243

 Score = 68.1 bits (159), Expect = 7e-12
 Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 5/172 (2%)
 Frame = +3

Query: 183 YASALFSAASKTKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALKHVANKI 362
           YA+AL   AS+   L+    +L + ++    +A + EF  NPT+ R  K   +  +A   
Sbjct: 64  YATALSEVASENGTLEATVSDLEKLEKIFAEEA-IAEFFDNPTVPRDEKAQLIDEIAKSS 122

Query: 363 SLSPTTGNLLGLLAENGRLDKLEAVINAFKIMMAAHRGEVTCEVVTAKPLDQAQRQNLEA 542
            L     N L ++ +NGR   +  ++  F+    +  G    EV T   + Q + Q+L  
Sbjct: 123 ELQAHVVNFLNVVVDNGRAGLMTQIVREFENAFNSLTG---TEVATVTSVVQLESQDLAQ 179

Query: 543 ALKKF--LKGNETLQLTAKVDPSLIGGMVVSI---GDKYVDMSVASKVKKYT 683
             ++   L G + +++  ++DP LI G  +     G   +DMSV  ++++ T
Sbjct: 180 IAQQVQNLTGAKNVRVKTRIDPELIAGFTIQYGRDGSSLIDMSVRKQIEEIT 231


>03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423
          Length = 529

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = +3

Query: 492 VVTAKPLDQAQRQNLEAALKKFLKGNETLQLTAKVDPSLIGGMVVSIG---DKYVDMSVA 662
           V +A  LD  Q + +   +++ + G  +L +   VDPSLI G VV  G      +D+SV 
Sbjct: 449 VSSAVELDARQTELIARKMRR-ITGFASLTIENVVDPSLIAGFVVCYGPGESHVIDLSVK 507

Query: 663 SKV 671
            K+
Sbjct: 508 GKL 510


>03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499
          Length = 454

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 466 AAIIILKALMTASSLSKRPFSASNPSRLPVVG 371
           AA+ +L+    A+++ +RP +   P RLPV+G
Sbjct: 15  AAVALLQLAKVAATMRRRPRTPPGPWRLPVIG 46


>08_01_0344 +
           3043824-3044123,3044260-3044314,3044810-3044985,
           3045083-3045283,3045383-3045642,3045909-3046222,
           3046399-3046622,3047046-3047398,3047709-3047826,
           3047875-3048133,3048252-3049729
          Length = 1245

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +3

Query: 510 LDQAQRQNLEAALKKFLKGNETLQLTAKVDPSLIGGMVVSIGDKYVDMSVASKVKKYTEL 689
           L+  Q +  +  + K L G+ +  ++    P L G  +++IG  Y D+    KV KY+ +
Sbjct: 659 LNSKQPKQEKDDIAKILLGSSSAAISGISKP-LFGYFIMTIGVAYYDLDAKRKVSKYSLI 717

Query: 690 ISAA 701
              A
Sbjct: 718 FFTA 721


>02_04_0538 +
           23739830-23740126,23740205-23740261,23740344-23740441,
           23740565-23740640,23741316-23741345,23741833-23741961,
           23742077-23742123,23742477-23742531,23742939-23743038,
           23743568-23743674,23743760-23743906,23744232-23744378,
           23744473-23744526,23744873-23744914
          Length = 461

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 700 AALISSVYFLTLLATLMSTYLSPIETTMPPINEGSTLAVSCR 575
           A L++++  L L   + S+  SP  ++ PP +  +T A SCR
Sbjct: 29  ALLVAALLLLFLDQAVQSSTKSPASSSSPPPSPTTTAAASCR 70


>03_02_0358 +
           7784067-7784128,7784239-7785040,7785513-7785617,
           7785835-7786194
          Length = 442

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 498 TAKPLDQAQR-QNLEAALKKFLKGNETLQLTAKVDPSLIGGM 620
           T  P+D A R + +E+ L+  L+G      T   DPS  G +
Sbjct: 170 TGAPIDDAARVRRIESRLRHVLRGGARCARTVLADPSAAGNL 211


>10_03_0019 -
           7123502-7123673,7124145-7124226,7124228-7124394,
           7124569-7125182
          Length = 344

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 21/94 (22%), Positives = 43/94 (45%)
 Frame = +3

Query: 297 IINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLDKLEAVINAFKIMMAAHRG 476
           ++ PT  R ++   L+ +A+ + L+P+   LL L+ E+G   +  A +     +M  H  
Sbjct: 81  VVTPTRARPLQAYYLRRLAHTLRLAPSP--LLWLVVESGAATRDTAALLRGCGVMYRHLS 138

Query: 477 EVTCEVVTAKPLDQAQRQNLEAALKKFLKGNETL 578
               +    +P  + +RQ+  A   +  + N  L
Sbjct: 139 SPVPDAPQDRPRRRGRRQDRPAVDSRARQRNTAL 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,908,747
Number of Sequences: 37544
Number of extensions: 385558
Number of successful extensions: 1026
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)