Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30b05
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0921 - 29431812-29432786                                         29   4.1  
03_05_0793 + 27755704-27756386,27756473-27757274,27757379-277576...    28   7.2  
02_05_0358 + 28264928-28266049                                         28   9.5  

>04_04_0921 - 29431812-29432786
          Length = 324

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -2

Query: 321 CSTRRCFGSNETGRRWWIIAKVR-RRRSWIRYRLF 220
           CS+ RC      G RWW  A  R    SW R RLF
Sbjct: 151 CSSGRCAWLRCGGSRWWSAAGGRWLSSSWPRRRLF 185


>03_05_0793 +
           27755704-27756386,27756473-27757274,27757379-27757634,
           27758355-27758566,27760494-27760709
          Length = 722

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 292 RNRQAVVDYCQSTKEAELDSVPIVHMVAVIP 200
           RNR A++D       A LD +P+  M A+IP
Sbjct: 30  RNRSALLDAINGHYAAALDRLPVEEMPALIP 60


>02_05_0358 + 28264928-28266049
          Length = 373

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 173 QWTRRWKIKWDYRHHMNNR 229
           +W+ RW  +W   HH N +
Sbjct: 319 RWSGRWSARWSQSHHSNRQ 337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,577,516
Number of Sequences: 37544
Number of extensions: 363808
Number of successful extensions: 796
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)