Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30b05
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67956-1|AAB07690.2|  157|Caenorhabditis elegans Hypothetical pr...    47   2e-05
Z47069-3|CAE17781.1|  141|Caenorhabditis elegans Hypothetical pr...    44   2e-04
AL110500-20|CAI79282.1|  110|Caenorhabditis elegans Hypothetical...    41   0.001
U40409-3|ABO16455.1|  681|Caenorhabditis elegans Related to yeas...    31   1.2  
U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeas...    31   1.2  
U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeas...    31   1.2  
AL110500-18|CAB54478.1|  118|Caenorhabditis elegans Hypothetical...    31   1.2  

>U67956-1|AAB07690.2|  157|Caenorhabditis elegans Hypothetical
           protein F16F9.1 protein.
          Length = 157

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 37/135 (27%), Positives = 51/135 (37%), Gaps = 3/135 (2%)
 Frame = +1

Query: 178 DATMENKMGLPPP-YEQSVPNXXXXXXXXXXXXXXXAGFVAPEAPPRTTVI--TSPQAXX 348
           +A  E+ MG P   Y+ S P                   V P   P  TV+  T+P+   
Sbjct: 25  NAKKESTMGTPEHHYKVSPPPFVPLTQPTVIDVEQLQNVVLPGGQPNPTVVIVTTPKPAP 84

Query: 349 XXXXXXXXXXXXXXCQTCNKTVVTRVDYVPNNRTHXXXXXXXXXXXXXXXXFVPYCMRSC 528
                         C +C K V T   +V  + T                 FVP+C+ SC
Sbjct: 85  SFASYETT------CYSCGKYVHTLPKFVIGSLT--WIVFILVLICFFPLAFVPFCLDSC 136

Query: 529 KTANHYCPQCKAFVG 573
           K A+HYCP+C A +G
Sbjct: 137 KDAHHYCPRCNALLG 151


>Z47069-3|CAE17781.1|  141|Caenorhabditis elegans Hypothetical
           protein F36G3.3 protein.
          Length = 141

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 24/90 (26%), Positives = 33/90 (36%)
 Frame = +1

Query: 304 APPRTTVITSPQAXXXXXXXXXXXXXXXXCQTCNKTVVTRVDYVPNNRTHXXXXXXXXXX 483
           +P  TT+ + P                  C  C   +VTR   V    T           
Sbjct: 48  SPVYTTLASGPMPTSTIIIRLEPHATKLQCPYCRMDIVTRTKSVYGLLT-WIFFAALFLF 106

Query: 484 XXXXXXFVPYCMRSCKTANHYCPQCKAFVG 573
                 F+P+C+RSCK   H CP C+A +G
Sbjct: 107 GCWCCCFLPFCLRSCKDIIHTCPNCRAMIG 136


>AL110500-20|CAI79282.1|  110|Caenorhabditis elegans Hypothetical
           protein Y87G2A.19 protein.
          Length = 110

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +1

Query: 502 FVPYCMRSCKTANHYCPQCKAFVGAF 579
           +VP+C+ + K A HYCP C+A++G +
Sbjct: 78  WVPFCVETFKDAEHYCPSCRAWIGTY 103


>U40409-3|ABO16455.1|  681|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform b
           protein.
          Length = 681

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -1

Query: 307 VLREQRNRQAVVDYCQSTKEAELDSVPIVHMVAVIPFYF 191
           ++RE RN + V+DYC+   + +L  + ++ +VA  P +F
Sbjct: 579 MVREYRNMEKVIDYCKDQNDPDL-WIHLLGVVAEFPAHF 616


>U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform a
           protein.
          Length = 759

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -1

Query: 307 VLREQRNRQAVVDYCQSTKEAELDSVPIVHMVAVIPFYF 191
           ++RE RN + V+DYC+   + +L  + ++ +VA  P +F
Sbjct: 579 MVREYRNMEKVIDYCKDQNDPDL-WIHLLGVVAEFPAHF 616


>U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform c
           protein.
          Length = 807

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -1

Query: 307 VLREQRNRQAVVDYCQSTKEAELDSVPIVHMVAVIPFYF 191
           ++RE RN + V+DYC+   + +L  + ++ +VA  P +F
Sbjct: 627 MVREYRNMEKVIDYCKDQNDPDL-WIHLLGVVAEFPAHF 664


>AL110500-18|CAB54478.1|  118|Caenorhabditis elegans Hypothetical
           protein Y87G2A.18 protein.
          Length = 118

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 505 VPYCMRSCKTANHYCPQCKAFVGAF 579
           VP+ +      NH CP CK F+G F
Sbjct: 91  VPFFLDQLLDVNHSCPACKKFLGRF 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,558,584
Number of Sequences: 27780
Number of extensions: 338483
Number of successful extensions: 816
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)