Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30b03
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    36   0.004
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    36   0.008
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    29   0.86 
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    28   1.1  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    27   2.0  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   2.0  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    27   2.6  
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    27   3.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.5  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   3.5  
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    26   4.6  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    26   4.6  
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    26   6.1  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    26   6.1  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   8.0  

>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = +2

Query: 215 WILAA----LPFPHLVRVLDCFFHEGIKVFYRVALAILIL 322
           W ++A    LP    +RV DCFF+EG KV +  AL IL L
Sbjct: 495 WFMSAFVGILPTETALRVWDCFFYEGSKVLFMTALCILRL 534


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +2

Query: 221 LAALPFPHLVRVLDCFFHEGIKVFYRVALAIL 316
           L  +P P+  R+LD FF EG +V +++ +AIL
Sbjct: 389 LCTMPLPYAFRLLDFFFLEGPRVLFQIGMAIL 420


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 251 RVLDCFFHEGIKVFYRVALAI 313
           R+LDC F  G +V ++VALA+
Sbjct: 395 RILDCLFVNGPRVLFQVALAL 415


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 312  SLSCSTSTQRTRTLSGTPKPPRTVWTTPSTNSA 410
            SLS +T T    T + TP P  T   TP+T SA
Sbjct: 926  SLSPNTVTTTKATTTFTPTPTTTTTPTPTTTSA 958


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 134 HAKSAAQHLSRLSGAIGPERIYADWQWWILAALPFPHLVRVLDCFFHEGIKVFYR 298
           H    ++ L RLS ++ P      WQ ++L++LP   L RV   F    +  F R
Sbjct: 53  HRIRRSRRLGRLSISVRPN---GSWQVYLLSSLPLRSLSRVWGQFNRAHLPTFLR 104


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/63 (22%), Positives = 32/63 (50%)
 Frame = +2

Query: 497  IKTEMTLKSKQVITGSRLVRSRSSDNLPTSQSQVNIQMMSHTLTIRELFTLWSWLPVRIT 676
            +KT ++L+S +  T    +    +     +  + N+ + +HT++  E  T ++W  V  T
Sbjct: 1034 VKTVVSLESYKFTTSKISLVKNPTKTYTVTDVETNVVVQTHTVSYVEHSTSYTW--VHTT 1091

Query: 677  MYQ 685
            +Y+
Sbjct: 1092 LYE 1094


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
            subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 583  EPVAGQHTDDVTHADHTRVVHIMVVVAG 666
            EP+ G+    + H DHTR + +     G
Sbjct: 954  EPILGEKASSLLHGDHTRTISMAAPSVG 981


>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 156 CCAADLACF--LAICMTVFQVTSFSSFV 79
           CC A +  F  + I  T+ + TSF+SFV
Sbjct: 11  CCGAVVTAFSVIGIVFTILKFTSFASFV 38


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 303 PWRSLSCSTSTQRTRTLSGTPKPPRTVWTTPSTNSAGTCPFRPPS 437
           P  S SC+TST      S +   P T    P++ S+ + P  P S
Sbjct: 223 PTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTS 267



 Score = 25.4 bits (53), Expect = 8.0
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 264 ASFTRASRYSTG*PWRSLSCSTSTQRTRT-LSGTPKPPRTVWTTPSTNSAGTCPFRPPS 437
           AS +     S+  P  S SC+TST    T  S TP  P    T P T+++ T    PP+
Sbjct: 320 ASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTP----TVPPTSTSSTSTPPPPA 374


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 399 SMAWSTPFLVASAYHSEFWFV 337
           SM WS  F V  AY S+ W +
Sbjct: 226 SMNWSAMFQVVGAYLSQIWII 246


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 20/101 (19%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
 Frame = +2

Query: 26  YHCMASLVASK--EKMFITQTKLLNEVTWKTVMQIAKKHAKSAAQHLSRLSGAIGPERIY 199
           ++C+A+L+     + ++   T  L    ++T +   KK+    A HL      +  + +Y
Sbjct: 333 FNCLANLLDKPFLQAVYTQDTSSLKSF-YQTFLDTLKKNEPELATHLLIKLELVPDDFVY 391

Query: 200 ADWQWWILAALPFPHLVRVLDCFFHEGIKVFYRVALAILIL 322
              +   +  +      R+LDC+  E    F ++ +A+  L
Sbjct: 392 PLLRKLFIPMVSPEIASRILDCYVFEEDSFFIQLLMAVFKL 432


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 386 PHRSWWLRRTTQSSGSLCA 330
           P   +WL+ T Q SG LCA
Sbjct: 125 PSMKYWLKLTNQLSGLLCA 143


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 262 IQYSYKVRERKGGQDPPLPVRVDPLG 185
           + Y  KV +R  G+ PP   ++ PLG
Sbjct: 24  VPYEIKVYDRVDGRAPPAYTKLSPLG 49


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +2

Query: 461 RALSSQYISRVFIKTEMTLKSKQVITGSRLVRSRSSDNLPTSQSQVNIQMMSHTLTIRE 637
           RA+S+ Y+S         +KS  V   + L   RSS  L T Q+ V    +  T  +RE
Sbjct: 446 RAISNPYVSNHLNFNVRRVKSDTVYIPTILQLLRSSTQLMTEQAFVASSNLKSTKGLRE 504


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 337 NEPEL*VVRRSHQERCGPRHRQILQEHARFAHQAAKDSVYHTRL 468
           N+P   +++++HQ +      Q+  EHA FA +      Y TRL
Sbjct: 365 NDPAYEMLKQNHQSKVRNTLSQLAIEHAAFAEKLT-FPYYKTRL 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,220,200
Number of Sequences: 5004
Number of extensions: 71410
Number of successful extensions: 244
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)