Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30b03
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.7  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   5.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.6  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   6.6  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 297 G*PWRSLSCSTSTQRTRTLSGTPKPPRTVWTTPSTN 404
           G PW +  C T T+R   L  T +    + +TP  N
Sbjct: 140 GNPWNTRYCLTPTERLEALCWT-QDEDVICSTPIGN 174


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/49 (22%), Positives = 23/49 (46%)
 Frame = +2

Query: 26  YHCMASLVASKEKMFITQTKLLNEVTWKTVMQIAKKHAKSAAQHLSRLS 172
           YH   +L A +++  + +     E+  KTV+ + ++  + A   L   S
Sbjct: 462 YHLYTNLTALRKRDVLKKGNFTIEILNKTVLAVVRQSEEEAVSLLINFS 510


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 19  GMLPLHGESGSVEGENVHN 75
           G+ P+H + G+  G NV+N
Sbjct: 61  GLFPVHEKGGASCGPNVYN 79


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 297 G*PWRSLSCSTSTQRTRTLSGTPKPPRTVWTTPSTN 404
           G PW +  C T T+R   L  T +    + +TP  N
Sbjct: 193 GNPWNTRYCLTPTERLEALCWT-QDEDIICSTPIGN 227


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 322 QDKDRQGYPVEYLDALVKEAI 260
           +D+ R G PVE  D L+K  I
Sbjct: 58  KDEKRSGRPVEVDDDLIKAII 78


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +2

Query: 323 FHK---HTTNQNSEWYAEATKNGVDHAIDKFCRNMPVSP 430
           FH+   HT N NS+  ++  +N     +D     M +SP
Sbjct: 221 FHRLSSHTLNHNSDKMSDQQENLTLKEVDNKVYGMALSP 259


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 302 LPCRIP*CPRERSNPILVQG 243
           LPC+   C +  S P L+QG
Sbjct: 41  LPCKCHLCGKAFSRPWLLQG 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,121
Number of Sequences: 438
Number of extensions: 5322
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)