Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30a17
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    32   0.081
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    29   1.00 
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac...    28   1.3  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    27   4.0  

>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 32.3 bits (70), Expect = 0.081
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 750 ILXEVVWQNICYCN*VVSLTRYHFICNFTLLLIY*ISV 637
           +L ++ WQ +CY +   S T  HF+ NF+ + I  ISV
Sbjct: 397 LLADIQWQRVCYKSFRESRTWLHFLHNFSRIWILHISV 434


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +2

Query: 533 KKTNCLVFGLVLVATVSYRHHGHPYLHFSLNVC*ETLIQ*INNKVKLQIK 682
           K + CL FG+  V  VS+R+  HP      + C E+++Q   +++ ++ +
Sbjct: 226 KMSYCLGFGIDSVRDVSHRYIRHPENGLPRDRCPESVLQQALHEINIEFR 275


>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
           Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 562 GVGCYSFL*TPWSPIFTLQSKCL 630
           G  C   L T WSP ++LQS CL
Sbjct: 87  GEVCMDILKTHWSPAWSLQSACL 109


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 135 NFQDYLLFLFNSICLTAVEIIHQYLSTY 218
           NF+  L   F SIC+  + + ++YL+ Y
Sbjct: 63  NFKSLLFLFFVSICVVILVVRYRYLNKY 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,024,945
Number of Sequences: 5004
Number of extensions: 60361
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)