Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30a16
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    30   0.23 
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    28   1.2  
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy...    26   5.0  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   5.0  

>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -2

Query: 575 YIIHYNMYITMIHNYNKIS*YDWYEYIFKSINNM 474
           +I+H  + +  +H+YN ++   WY Y + S+N +
Sbjct: 170 FILHSMVILMKLHSYNVVN--GWYSYCYHSLNKL 201


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 123 FSLAVIKCCDAEHNE 167
           F LAVIKCCD  H E
Sbjct: 162 FVLAVIKCCDIVHRE 176


>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +3

Query: 135 VIKCCDAEHNEIPCMTYAGGVCRKVGNCPTGTEVTIKGLCPLQQLDDVEC 284
           V+  C      +  +    G+       P GT+ ++KG+ P +QLD + C
Sbjct: 12  VVARCSTTRARVTDIQLPHGLVESPVFMPVGTQASLKGVLP-EQLDALGC 60


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = -3

Query: 184 YVIHGISLCSASQHFITAKLKIT 116
           ++ HG+ +C  S+H + + + +T
Sbjct: 293 FIYHGLPICEKSKHILMSSINLT 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,983
Number of Sequences: 5004
Number of extensions: 46688
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)