Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30a11
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    42   1e-04
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    30   0.39 
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    28   1.6  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    27   2.8  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.8  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    26   6.4  
SPBC354.06 |mrps16||mitochondrial ribosomal protein subunit S16|...    25   8.5  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   8.5  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 2/128 (1%)
 Frame = +3

Query: 345  EAARCLKCADAPCQKS--CPTQIDVKSFITSIANKNYYGAAKAILSDNPLGLTCGMVCPT 518
            + ARC+ C    CQ    CP    + ++   +  + +  A   +L  N      G VCP 
Sbjct: 1652 QTARCMDCGTPFCQSDYGCPISNKIFTWNDLVFKQQWKEALTQLLLTNNFPEFTGRVCPA 1711

Query: 519  SDLCVGGCNLHATEEGAINIGGLQHFAVDIFMKMGIPQTLDPNTKPLPKGGDHKIALIGG 698
               C G C L   E   + I  ++   +D   + G    + P   P  + G  ++A+IG 
Sbjct: 1712 P--CEGACTLGIIES-PVGIKSVERAIIDKAWEEG---WIVPRP-PAERTG-RRVAIIGS 1763

Query: 699  GPASISCA 722
            GPA ++ A
Sbjct: 1764 GPAGLAAA 1771


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +3

Query: 105 KSISNIMAKLLSKELPDIENLLKLNPTVKPYTNLVPSAQTK 227
           KS   I+AKLL++     +N LKLN T+K     +  A+TK
Sbjct: 39  KSKDEIIAKLLTEGQALSKNELKLNNTIKQLKKSLSEAETK 79


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 718 QLILAGPPPIKAILWSPPFGSGFVLGSKVWGMPIFMNMSTAKC 590
           ++  A  P   A+ WSPP  SG V+G      P    ++TA C
Sbjct: 139 RIFTAHEPGCNAVCWSPPSLSGSVVGQSPAAGP--KKLATAGC 179


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
 Frame = +3

Query: 177 NPTVKPYTNLVPSAQTKKIKQHWKRNADRKCTTCPTLNKNFDDIKHTTLSERGALREAAR 356
           N +V    N   S +T   K HWK ++D    + P+ +  F           G       
Sbjct: 129 NSSVATSLNYQSSRETGISKDHWKPDSDVSVCSFPSCSVRF-----------GLFDRRHH 177

Query: 357 CLKCADAPCQKSC----PTQIDVK 416
           C +C D  C   C    P  +DVK
Sbjct: 178 CRRCGDIFCALHCDRNIPLTMDVK 201


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/59 (25%), Positives = 24/59 (40%)
 Frame = +3

Query: 36  PSARKKYSYTRRHFISDYKTDFFKSISNIMAKLLSKELPDIENLLKLNPTVKPYTNLVP 212
           P  +     T   F   + T  +  +  + AKL  ++  D+ NLLK     K   N +P
Sbjct: 401 PKEKATLGKTVNSFFGSHSTSNYSKVP-LSAKLTGEKSDDLSNLLKNKGKKKSQDNQIP 458


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +3

Query: 66  RRHFISDYKTDFFKSISNIMAKLLSKELPDIENLLKLNPTVKPYTNLVPSAQTKKIKQH 242
           R   I D++   F  + N M      ++P+I+ L+   PT  P  NL+     + ++ H
Sbjct: 304 RETLIQDFRKKKFPVLVNCMVLTEGTDIPNIDCLMIARPTSSP--NLLTQMIGRGLRLH 360


>SPBC354.06 |mrps16||mitochondrial ribosomal protein subunit
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 96

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 457 QRRPFYQTIPSV*LAAWSAPPAIYASGDATFTPLKKEL 570
           + RPFY  + +    AW AP A       TF P+ K++
Sbjct: 13  RNRPFYHIVVA---NAWKAPQAKPIETIGTFDPIPKKI 47


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = +3

Query: 45  RKKYSYTRRHFISDYKTDFFKSISNIMAKLLSKELPDIENLLKLNPTVK 191
           R  Y+Y     I+   TDF   I NI  K     L D + L   N T K
Sbjct: 615 RDSYTYEELAKITGLSTDFLTGILNIFLKAKVLLLGDNDKLGDPNSTYK 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,257,439
Number of Sequences: 5004
Number of extensions: 70736
Number of successful extensions: 207
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)