Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30a11
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 43 3e-04
05_07_0059 + 27402365-27402733,27402848-27402982,27403070-274031... 40 0.003
12_02_0512 - 19889845-19890468,19890958-19891413,19891727-19892215 31 0.72
09_04_0030 + 13940168-13940250,13940703-13941714 31 0.72
09_04_0029 - 13932414-13933416,13933821-13933903 31 0.95
08_01_0669 - 5767689-5767791,5768512-5768630,5769084-5769271,576... 30 2.2
07_03_1483 + 26881032-26882035,26882130-26882204,26882324-268828... 30 2.2
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589... 29 2.9
01_07_0231 + 42176598-42178117,42178232-42179753 29 2.9
06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250... 29 3.8
01_07_0171 + 41683670-41683872,41684386-41684483,41684614-416846... 29 3.8
11_01_0614 + 4911167-4911830,4911944-4911984 29 5.1
09_04_0285 + 16390786-16391291,16391370-16391957,16392034-163921... 29 5.1
10_08_0332 - 16843295-16843356,16843884-16846656 28 6.7
08_01_1024 - 10349061-10349200,10349373-10350040,10350478-103505... 28 6.7
02_01_0117 - 866336-866890,867484-869010 28 6.7
01_05_0297 - 20578031-20578080,20578162-20578236,20578317-205784... 28 8.8
>01_06_0276 - 28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 42.7 bits (96), Expect = 3e-04
Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 13/229 (5%)
Frame = +3
Query: 75 FISDYKTDFFKSISNIMAKLLSKEL---PDIENLLKLNPT-VKPYTNLV-PSAQTKKIKQ 239
F+ + D+ + + N+ A+ + +L P I N + + V+P + P+ + K
Sbjct: 1592 FVKVFPRDYKRVLDNMKAEKAAAKLAKEPKISNGVSVTTKKVQPEQSTNRPTRVSNAKKY 1651
Query: 240 HWKRNADRKCTTCPTLNKNFDDIKHTTL-SERGAL--REAARCLKCADAPCQKS-----C 395
+ +R+ + N+ D K + S G L ++ARC+ C C + C
Sbjct: 1652 RGFISYERESISYRDPNERVKDWKEVAIESVPGPLLNTQSARCMDCGTPFCHQESSGAGC 1711
Query: 396 PTQIDVKSFITSIANKNYYGAAKAILSDNPLGLTCGMVCPTSDLCVGGCNLHATEEGAIN 575
P + F + + A +L N G VCP C G C L E ++
Sbjct: 1712 PLGNKIPEFNELVHQNRWREALDRLLETNNFPEFTGRVCPAP--CEGSCVLGIIEN-PVS 1768
Query: 576 IGGLQHFAVDIFMKMGIPQTLDPNTKPLPKGGDHKIALIGGGPASISCA 722
I ++ +D + G + P PL + G K+A+IG GPA ++ A
Sbjct: 1769 IKSIECAIIDKGFEEG---WMVPRP-PLQRTGK-KVAIIGSGPAGLAAA 1812
>05_07_0059 + 27402365-27402733,27402848-27402982,27403070-27403183,
27403297-27403449,27403544-27403644,27403945-27404041,
27404542-27404651,27404775-27404878,27405129-27405308,
27405398-27405741,27405841-27405905,27405981-27406450,
27406939-27407793,27408045-27408116,27408475-27408575,
27409069-27409170,27409295-27409456,27409665-27411230,
27411384-27411602,27413924-27414198,27414291-27414596,
27414727-27415012,27415085-27415087,27415162-27415416,
27415537-27415803
Length = 2236
Score = 39.5 bits (88), Expect = 0.003
Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 5/131 (3%)
Frame = +3
Query: 345 EAARCLKCADAPCQKS-----CPTQIDVKSFITSIANKNYYGAAKAILSDNPLGLTCGMV 509
++ARC+ C C + CP + F + ++ A +L N G V
Sbjct: 1759 QSARCMDCGTPFCHQEGSGAGCPLGNKIPEFNELVHQNRWHEALDRLLETNNFPEFTGRV 1818
Query: 510 CPTSDLCVGGCNLHATEEGAINIGGLQHFAVDIFMKMGIPQTLDPNTKPLPKGGDHKIAL 689
CP C G C L + ++I ++ +D G + PL + G ++A+
Sbjct: 1819 CPAP--CEGSCVL-GIIDNPVSIKSIECAIID----KGFEEGWMVPRPPLRRTG-KRVAI 1870
Query: 690 IGGGPASISCA 722
+G GPA ++ A
Sbjct: 1871 VGSGPAGLAAA 1881
>12_02_0512 - 19889845-19890468,19890958-19891413,19891727-19892215
Length = 522
Score = 31.5 bits (68), Expect = 0.72
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3
Query: 600 VDIFMKMGIPQTLDPNTKPLPKGGDHKIALIG 695
+D F +M I Q LDPN P GGD LIG
Sbjct: 261 LDSFFEMVIEQHLDPNRAPPENGGDLVDVLIG 292
>09_04_0030 + 13940168-13940250,13940703-13941714
Length = 364
Score = 31.5 bits (68), Expect = 0.72
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +3
Query: 432 IANKNYYGAAKAILS-DNPLGLTCGMVCPTSDLCVGGCNLHATEEGAINIGGLQHFAVDI 608
+ N++Y A L D+ L C V S + + G N G + +GGL H AV
Sbjct: 141 VVNEHYVLRVPAGLPLDSAAPLLCAGVTVYSPMVIHGLNAPGKHVGVVGLGGLGHVAVKF 200
Query: 609 FMKMGIPQTL 638
G+ T+
Sbjct: 201 AKAFGMRVTV 210
>09_04_0029 - 13932414-13933416,13933821-13933903
Length = 361
Score = 31.1 bits (67), Expect = 0.95
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +3
Query: 432 IANKNYYGAAKAILS-DNPLGLTCGMVCPTSDLCVGGCNLHATEEGAINIGGLQHFAVDI 608
+ N++Y A L D L C V S + + G N G + +GGL H AV
Sbjct: 138 VVNEHYVLRVPAGLPLDGAAPLLCAGVTVYSPMVIHGLNAPGKHVGVVGLGGLGHVAVKF 197
Query: 609 FMKMGIPQTL 638
G+ T+
Sbjct: 198 AKAFGMRVTV 207
>08_01_0669 -
5767689-5767791,5768512-5768630,5769084-5769271,
5769624-5769718,5769936-5770093
Length = 220
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +2
Query: 389 VVSHADRCQKLHH*HRQ*ELLWSSEGHFIRQ---SPRFDLR 502
VVS +RC LH H Q +WS HF+ SP F L+
Sbjct: 76 VVSTGERCSDLHF-HPQQRFIWSDSIHFVVNWLVSPSFTLQ 115
>07_03_1483 +
26881032-26882035,26882130-26882204,26882324-26882861,
26883999-26884895,26885178-26885327,26885459-26885791,
26886501-26886695,26887805-26887918
Length = 1101
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 727 KQAQLILAGPPPIKAILWSPPFGSGFVLGSKVWGMP 620
K + +L G P K W PP+ G V G +VW +P
Sbjct: 301 KAIKKLLVGHP--KRDPWPPPWSGGVVRGGEVWHIP 334
>03_02_0143 -
5888005-5888088,5888818-5888949,5889485-5889634,
5890540-5890710,5890840-5891007,5891139-5891234,
5891777-5891839,5891949-5892114,5892207-5892274,
5892646-5892789,5893111-5893176,5893329-5893520,
5894567-5894657,5895241-5895329,5895521-5895583,
5895698-5895823,5895902-5895991,5896059-5896181,
5896503-5896619,5896704-5896904,5897643-5897723,
5897897-5897977,5898083-5898184,5898264-5898488,
5898571-5898726,5898798-5899010,5899306-5899455,
5900082-5900204,5900299-5900364,5900555-5900620,
5900686-5900817,5900891-5900965,5901355-5901438,
5901516-5901668,5901741-5901806,5902044-5902205,
5902272-5902388,5902495-5902566,5902702-5902761,
5902869-5902985,5904131-5904430,5904518-5904622,
5905710-5905775,5905853-5906297,5906399-5906567,
5906684-5906736,5906819-5906925
Length = 1981
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +3
Query: 102 FKSISNIMAKLLSKELPDIENLLKLNPTVKPYTNLVPSAQTKKIKQHWK 248
+KS++ + +++ EN+L PT TN+ A ++KQH++
Sbjct: 432 YKSLNRVQSRIFQATYYTNENILVCAPTGAGKTNIAMIAVLHEVKQHFR 480
>01_07_0231 + 42176598-42178117,42178232-42179753
Length = 1013
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 612 MKMGIPQTLDPNTKPLPKGGDHKIALIGGGPAS 710
M + P LDPN P GD+ + G GPAS
Sbjct: 597 MNVAKPLVLDPNEYPHGGDGDNNLETSGRGPAS 629
>06_03_1208 -
28422941-28423139,28423854-28424434,28424705-28425078,
28425235-28425339,28425902-28425970,28426084-28426156,
28426395-28426478,28426616-28426648,28426731-28426790,
28427535-28427627,28427851-28427970,28428804-28428886,
28428887-28429007,28429114-28429164,28429245-28429333,
28429429-28429561,28430220-28430354,28430581-28430952,
28431679-28431796,28431883-28431998,28432131-28432442
Length = 1106
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 3 SLCRTASEQSTPSARKKY-SYTRRHFISDYKTDFFKSISNIMAKLLSK 143
S RT S + P+ + Y Y+R HFI ++ + K SN++ SK
Sbjct: 287 SSSRTHSTLTDPNFVENYFKYSRLHFIGTWRNRYRKRFSNLLGDKSSK 334
>01_07_0171 +
41683670-41683872,41684386-41684483,41684614-41684692,
41684845-41685000,41685021-41685146,41686249-41686540,
41686978-41687053,41687295-41687392,41687523-41687665,
41688522-41688579,41689055-41689213,41689291-41689343,
41689978-41690212,41690317-41690403,41690607-41690711
Length = 655
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +3
Query: 153 DIENLLKLNPTVKPYTNLVPSAQTKKIKQHWKR--NADRKCTTCPTLNKNFDDIKHTTLS 326
D++ TV+ Y NL S T+ H+ N + C T K DD+K T+S
Sbjct: 525 DVQRTPGYAETVRTYGNLTHSI-TEYYSTHFSTGANTSQVCLTYDEFTKKCDDLKKITVS 583
Query: 327 ERGALR 344
+ AL+
Sbjct: 584 DVFALQ 589
>11_01_0614 + 4911167-4911830,4911944-4911984
Length = 234
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +3
Query: 588 QHFAVDIFMKMGIPQTLDPNTKPLPKGGDHKIALIGGGPASISCA 722
Q A+D+ P LD T P H +A G G S+ CA
Sbjct: 34 QQVAIDVGSGQQSPLLLDAATTPQGDSALHVVAASGDGEGSLRCA 78
>09_04_0285 +
16390786-16391291,16391370-16391957,16392034-16392160,
16392291-16392477,16392585-16392741,16392847-16393201
Length = 639
Score = 28.7 bits (61), Expect = 5.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -1
Query: 265 FLSAFLFQCCLIFLVW 218
F+ AF F CC++FL++
Sbjct: 437 FIKAFFFYCCIVFLIY 452
>10_08_0332 - 16843295-16843356,16843884-16846656
Length = 944
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +3
Query: 90 KTDFFKSISNIMAKLLSKELPDIENLLKLNPTVKPYTNLVPSAQTKKIKQ 239
K +F SN ++ + EL ++ENL++L+ + T +PS+ K+KQ
Sbjct: 413 KLEFLYLFSNNLSGSIPVELGELENLVELDLSENSLTGPIPSS-LGKLKQ 461
>08_01_1024 -
10349061-10349200,10349373-10350040,10350478-10350591,
10351956-10352032
Length = 332
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +3
Query: 462 KAILSDNPLGLTCGMVCPTSDLCVGGCNLHATEEGAINIGGLQHFAVDIFMKMGIPQTL 638
+A+ D L C + S + G N+ + G + +GGL H AV G+ T+
Sbjct: 147 EAMPLDKGAPLLCAGITVYSPMKYHGLNVPSKHVGVLGLGGLGHVAVKFAKAFGMTVTV 205
>02_01_0117 - 866336-866890,867484-869010
Length = 693
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -1
Query: 694 PIKAILWSPPFGSGFVLGSKVWGMPIFMNMSTAKC*SPPILIAPSSVA 551
P++A ++P SG + G +W +P + +S A +PP+ + S A
Sbjct: 632 PVRAHTFAPAVASGLICGDGIWSLPSSI-LSLANV-NPPMCMRVFSTA 677
>01_05_0297 -
20578031-20578080,20578162-20578236,20578317-20578416,
20578476-20578535,20578833-20578907,20578989-20579069,
20579596-20579665,20579769-20579833,20580008-20580116,
20580812-20580876,20580964-20581023,20582008-20582134,
20582215-20582315,20583209-20583316,20583429-20583464,
20583569-20583714,20585555-20585564
Length = 445
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 24 EQSTPSARKKYSYTRRHFISDYKTDFFKSISNIMAKLLSK 143
E+++PS + YTR + + F+K SN AK+L K
Sbjct: 261 EKASPSLGRTALYTREYLTVQFVRFFWKRESNQKAKILRK 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,642,033
Number of Sequences: 37544
Number of extensions: 519610
Number of successful extensions: 1335
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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