Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30a11
(736 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical pr... 288 3e-78
Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical pr... 50 2e-06
U41263-12|AAO38594.1| 422|Caenorhabditis elegans Hypothetical p... 28 7.9
U41263-11|AAO38595.1| 516|Caenorhabditis elegans Hypothetical p... 28 7.9
U41263-10|AAO38593.1| 610|Caenorhabditis elegans Hypothetical p... 28 7.9
AL021491-2|CAA16375.1| 319|Caenorhabditis elegans Hypothetical ... 28 7.9
AF016420-8|AAB65305.1| 364|Caenorhabditis elegans Serpentine re... 28 7.9
AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical ... 28 7.9
>U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical
protein C25F6.3 protein.
Length = 1059
Score = 288 bits (706), Expect = 3e-78
Identities = 140/206 (67%), Positives = 162/206 (78%), Gaps = 5/206 (2%)
Frame = +3
Query: 132 LLSKELPDIENLLKLNPTVKPYTNLVPSAQTKKIKQHWKRNADRKC-TTC--PTLNKNFD 302
LLSK+ PDIE+LL LNP V+ N VPSA TKK K +WKRN ++ C +TC L +F
Sbjct: 16 LLSKDSPDIESLLILNPKVQDKANAVPSAVTKKNKHNWKRNEEKGCGSTCGESKLKNDFR 75
Query: 303 DIKHTTLSERGALREAARCLKCADAPCQKSCPTQIDVKSFITSIANKNYYGAAKAILSDN 482
DIKHTTLSERGAL+EA RCLKCADAPCQKSCPTQ+DVKSFITSI+NKNYYGAA+ ILSDN
Sbjct: 76 DIKHTTLSERGALKEAMRCLKCADAPCQKSCPTQLDVKSFITSISNKNYYGAARQILSDN 135
Query: 483 PLGLTCGMVCPTSDLCVGGCNLHATEEGAINIGGLQHFAVDIFMKMGIPQTLDPNTKPLP 662
PLGLTCGM+CPTSDLCVG CNL A+EEGAINIGGLQ +A D+F +M + Q + +
Sbjct: 136 PLGLTCGMICPTSDLCVGSCNLQASEEGAINIGGLQQYACDVFKQMNVRQIVSKEVRE-N 194
Query: 663 KGGDHK--IALIGGGPASISCACFLA 734
+ HK +ALIG GPASISCA FLA
Sbjct: 195 RNASHKEQVALIGCGPASISCASFLA 220
>Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical protein
W07E11.1 protein.
Length = 2207
Score = 50.0 bits (114), Expect = 2e-06
Identities = 48/171 (28%), Positives = 70/171 (40%), Gaps = 3/171 (1%)
Frame = +3
Query: 228 KIKQHWKRNADRKCTTCPTLNKNFDDIKHTTLSERGALRE-AARCLKCADAPCQ--KSCP 398
K++ K N +K P N D + + R +RE AARC+ C CQ CP
Sbjct: 1703 KLRGFVKYNRQKKMYRDPKERLNDWDEVYDFEAVRSNIREQAARCMDCGVPFCQGHSGCP 1762
Query: 399 TQIDVKSFITSIANKNYYGAAKAILSDNPLGLTCGMVCPTSDLCVGGCNLHATEEGAINI 578
+ + + KN+ A + +L N G VCP C G C L A+ I
Sbjct: 1763 LGNIIPKWNDFVFKKNWRQALEQLLQTNNFPEFTGRVCPAP--CEGACTL-GIGSPAVTI 1819
Query: 579 GGLQHFAVDIFMKMGIPQTLDPNTKPLPKGGDHKIALIGGGPASISCACFL 731
++ +D G + P KP G +IA+IG GP+ + A L
Sbjct: 1820 KSIECAIIDYAFMQG---WMKP-CKPAFNTG-KRIAIIGSGPSGLGAAAQL 1865
>Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical protein
W07E11.1 protein.
Length = 2207
Score = 50.0 bits (114), Expect = 2e-06
Identities = 48/171 (28%), Positives = 70/171 (40%), Gaps = 3/171 (1%)
Frame = +3
Query: 228 KIKQHWKRNADRKCTTCPTLNKNFDDIKHTTLSERGALRE-AARCLKCADAPCQ--KSCP 398
K++ K N +K P N D + + R +RE AARC+ C CQ CP
Sbjct: 1703 KLRGFVKYNRQKKMYRDPKERLNDWDEVYDFEAVRSNIREQAARCMDCGVPFCQGHSGCP 1762
Query: 399 TQIDVKSFITSIANKNYYGAAKAILSDNPLGLTCGMVCPTSDLCVGGCNLHATEEGAINI 578
+ + + KN+ A + +L N G VCP C G C L A+ I
Sbjct: 1763 LGNIIPKWNDFVFKKNWRQALEQLLQTNNFPEFTGRVCPAP--CEGACTL-GIGSPAVTI 1819
Query: 579 GGLQHFAVDIFMKMGIPQTLDPNTKPLPKGGDHKIALIGGGPASISCACFL 731
++ +D G + P KP G +IA+IG GP+ + A L
Sbjct: 1820 KSIECAIIDYAFMQG---WMKP-CKPAFNTG-KRIAIIGSGPSGLGAAAQL 1865
>U41263-12|AAO38594.1| 422|Caenorhabditis elegans Hypothetical
protein T19D12.2b protein.
Length = 422
Score = 27.9 bits (59), Expect = 7.9
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Frame = +3
Query: 411 VKSFITSIA-NKNYYGAAKAILSDNPLGLTCGMVCPTSDL--CVGGCNLHATEEGAINIG 581
+ +F+ ++ N N+YG A IL+ + L + PT+D G + + +E +
Sbjct: 11 INAFVENVLLNSNFYGLALDILTHDNRTLVTAIPYPTTDKYNVQGYGSARSVDEFRNQVI 70
Query: 582 GLQHFAVDIFMKMGIPQTLDPNTKPLPKGGDHKIALIGGGPASI 713
I I L T LP GG +I G A++
Sbjct: 71 AFNGMIQPISQSSSISDALLYVTTSLPAGGVKSSLIIVGNSAAM 114
>U41263-11|AAO38595.1| 516|Caenorhabditis elegans Hypothetical
protein T19D12.2c protein.
Length = 516
Score = 27.9 bits (59), Expect = 7.9
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Frame = +3
Query: 411 VKSFITSIA-NKNYYGAAKAILSDNPLGLTCGMVCPTSDL--CVGGCNLHATEEGAINIG 581
+ +F+ ++ N N+YG A IL+ + L + PT+D G + + +E +
Sbjct: 11 INAFVENVLLNSNFYGLALDILTHDNRTLVTAIPYPTTDKYNVQGYGSARSVDEFRNQVI 70
Query: 582 GLQHFAVDIFMKMGIPQTLDPNTKPLPKGGDHKIALIGGGPASI 713
I I L T LP GG +I G A++
Sbjct: 71 AFNGMIQPISQSSSISDALLYVTTSLPAGGVKSSLIIVGNSAAM 114
>U41263-10|AAO38593.1| 610|Caenorhabditis elegans Hypothetical
protein T19D12.2a protein.
Length = 610
Score = 27.9 bits (59), Expect = 7.9
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Frame = +3
Query: 411 VKSFITSIA-NKNYYGAAKAILSDNPLGLTCGMVCPTSDL--CVGGCNLHATEEGAINIG 581
+ +F+ ++ N N+YG A IL+ + L + PT+D G + + +E +
Sbjct: 11 INAFVENVLLNSNFYGLALDILTHDNRTLVTAIPYPTTDKYNVQGYGSARSVDEFRNQVI 70
Query: 582 GLQHFAVDIFMKMGIPQTLDPNTKPLPKGGDHKIALIGGGPASI 713
I I L T LP GG +I G A++
Sbjct: 71 AFNGMIQPISQSSSISDALLYVTTSLPAGGVKSSLIIVGNSAAM 114
>AL021491-2|CAA16375.1| 319|Caenorhabditis elegans Hypothetical
protein Y44A6B.3 protein.
Length = 319
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 278 SNPEQEFRRYQTHDAVRTWSFTGGGTMSQVC*RAVSEVVSHAD 406
SNP+ +TH+ +R + F GGT++Q+ +V++AD
Sbjct: 241 SNPKNFEFEDKTHEGIRNYQFF-GGTLNQITVPIYILIVTYAD 282
>AF016420-8|AAB65305.1| 364|Caenorhabditis elegans Serpentine
receptor, class r protein5 protein.
Length = 364
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +3
Query: 27 QSTPSARKKYSYTRRHFISDYKTDFFKSISNIMAKLLSKELPDIENLLK 173
QS A YS++++HFIS + +S+ NI L K+ +I+N LK
Sbjct: 109 QSVEYAYSLYSWSKKHFISSH----LESLENIRL-LRLKDNKNIDNCLK 152
>AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical
protein Y48G8AL.10 protein.
Length = 976
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 225 KKIKQHWKRNADRKCTTCPTLNKNFDDIKHTTLSERGALREAARCLKC 368
++IK+H R+ RK C T +K+F + +L R+ +C C
Sbjct: 607 RQIKEHRARHLPRKSHLCWTCHKSFRTAQLLSLHAEVHDRQPIQCAHC 654
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,455,723
Number of Sequences: 27780
Number of extensions: 420605
Number of successful extensions: 1062
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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