Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30a05
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.1  
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    27   2.8  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    27   2.8  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    26   4.8  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    25   8.4  
SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr...    25   8.4  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 601  QDSSKNTSVECCVHDRVILKACLLQKLQ 684
            +DS+K  S+E C   R+IL+  L  K+Q
Sbjct: 4438 EDSTKQLSIELCEQLRLILEPTLATKMQ 4465


>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 222 GLFLSILSIYNINCNGS*NFT*YYYHTIKFISI 124
           GLF S+ + Y +NC+G   F    Y  +K ++I
Sbjct: 82  GLFSSLRAEYKLNCSGKELFDGSVYRDLKSVNI 114


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 83  PKPNHDHPNFTTKTGPLQSFQK*C 12
           PKP     NF  K+GP+QS  + C
Sbjct: 282 PKPTRKTGNFYMKSGPMQSSMEPC 305


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +3

Query: 15  LFLKTLKRSRFSSKIW 62
           L++KT++R+ F SK+W
Sbjct: 62  LYMKTIERAHFPSKLW 77


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 389 QSLDKSVLPIYLLLNRDFF 445
           QS D SVL  YLL++RD F
Sbjct: 522 QSNDPSVLQEYLLIDRDVF 540


>SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 371 PFNGFPQSLDKSVLPIYLLLNRDFF*SHFCDQLYIMLDCFCLRTHIVTYTHKMS 532
           P  G P+ LD S +  + ++ R FF S   D   ++     +  ++   THKMS
Sbjct: 144 PVEGAPE-LDVSKITQFSIMIRSFFNSQSGDYELVLNSIRAIPKNVPFTTHKMS 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,368
Number of Sequences: 5004
Number of extensions: 51298
Number of successful extensions: 73
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)