Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30a04
         (778 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U82936-1|AAB40869.1|  682|Caenorhabditis elegans protein kinase ...    33   0.23 
U82935-1|AAB40868.1|  680|Caenorhabditis elegans protein kinase ...    33   0.23 
U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase ...    33   0.23 
U29376-4|AAM51504.1|  682|Caenorhabditis elegans Protein kinase ...    33   0.23 
U29376-3|AAM51503.1|  680|Caenorhabditis elegans Protein kinase ...    33   0.23 
Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical pr...    31   0.70 
AL031632-5|CAE11314.1|  324|Caenorhabditis elegans Hypothetical ...    31   0.70 
Z81492-2|CAB04027.1|  458|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AF025457-4|AAB70966.1|  385|Caenorhabditis elegans Hypothetical ...    29   2.8  
AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    29   3.7  
AF003130-12|AAB54128.2|  175|Caenorhabditis elegans Hypothetical...    29   3.7  
AF003130-11|AAM15579.1|  250|Caenorhabditis elegans Hypothetical...    29   3.7  
AF003130-9|AAP68939.1|  307|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical ...    28   8.6  
AC006680-9|AAK72299.1|  353|Caenorhabditis elegans Hypothetical ...    28   8.6  

>U82936-1|AAB40869.1|  682|Caenorhabditis elegans protein kinase C2
           B isoform protein.
          Length = 682

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 454 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKD-IFDRINTYTFC 311
           LFF H K +++R    D  + E    + I+    CK+ IF    T TFC
Sbjct: 460 LFFLHSKGIIYRDLKLDNVMLERDGHIKITDFGMCKENIFGDATTKTFC 508


>U82935-1|AAB40868.1|  680|Caenorhabditis elegans protein kinase C2
           A isoform protein.
          Length = 680

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 454 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKD-IFDRINTYTFC 311
           LFF H K +++R    D  + E    + I+    CK+ IF    T TFC
Sbjct: 460 LFFLHSKGIIYRDLKLDNVMLERDGHIKITDFGMCKENIFGDATTKTFC 508


>U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase c
           protein 2, isoformc protein.
          Length = 936

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 454 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKD-IFDRINTYTFC 311
           LFF H K +++R    D  + E    + I+    CK+ IF    T TFC
Sbjct: 600 LFFLHSKGIIYRDLKLDNVMLERDGHIKITDFGMCKENIFGDATTKTFC 648


>U29376-4|AAM51504.1|  682|Caenorhabditis elegans Protein kinase c
           protein 2, isoformb protein.
          Length = 682

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 454 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKD-IFDRINTYTFC 311
           LFF H K +++R    D  + E    + I+    CK+ IF    T TFC
Sbjct: 460 LFFLHSKGIIYRDLKLDNVMLERDGHIKITDFGMCKENIFGDATTKTFC 508


>U29376-3|AAM51503.1|  680|Caenorhabditis elegans Protein kinase c
           protein 2, isoforma protein.
          Length = 680

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 454 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKD-IFDRINTYTFC 311
           LFF H K +++R    D  + E    + I+    CK+ IF    T TFC
Sbjct: 460 LFFLHSKGIIYRDLKLDNVMLERDGHIKITDFGMCKENIFGDATTKTFC 508


>Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical
           protein F23B12.7 protein.
          Length = 953

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
 Frame = +2

Query: 140 IQKIIQR-ENFVSHD---VETKKIYPDGSGFMGDLYVVDVRGTTKDGRKEMSLFV-KQII 304
           IQK+++  ++ ++ D   ++TK+   +GS     LY V  +GT  D R  M L + K  +
Sbjct: 123 IQKLLEEGKDEMAQDAALLQTKEKQDNGSEASW-LYSVISKGTATDKRTAMQLQMHKSPV 181

Query: 305 HNAERIS--IYSVEDIFAREALAYRELCPVFEDLQIEAGIPENER 433
           H+ E I   I S +    R+ +   ++ P+ ED+ I   +PEN +
Sbjct: 182 HSLEYIEKLIASCKKQGTRDVV---DIIPILEDVFINHCLPENRK 223


>AL031632-5|CAE11314.1|  324|Caenorhabditis elegans Hypothetical
           protein Y32B12B.7 protein.
          Length = 324

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 346 DIFDRINTYTFCIVYNLLNKQTHFFAAVFCCSSDIYNI*VAHK 218
           + FD INT ++ + Y  L+ Q H     F C+  I+   VA K
Sbjct: 272 EFFDLINTISYIVHYISLDAQAHVITWYFYCTHPIFKKKVARK 314


>Z81492-2|CAB04027.1|  458|Caenorhabditis elegans Hypothetical
           protein E03H4.5 protein.
          Length = 458

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = -1

Query: 532 HYVHSVVRFIAFLTNIL*NDN-VFCTFLF-FYHFKSLVFRYSSFDLKIFENRTELSISQC 359
           + V+SVV  I  L N L ++  +  +F   FYHF  + +RY S  L+IF     +S  + 
Sbjct: 21  YLVNSVVEQIQQLANFLESEKKIDASFAIKFYHFAYVDYRYDSPRLRIFALNPCIS-KKN 79

Query: 358 FSCKDIF 338
           F   DIF
Sbjct: 80  FLSVDIF 86


>AF025457-4|AAB70966.1|  385|Caenorhabditis elegans Hypothetical
           protein C08E3.6 protein.
          Length = 385

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/83 (20%), Positives = 41/83 (49%)
 Frame = +2

Query: 143 QKIIQRENFVSHDVETKKIYPDGSGFMGDLYVVDVRGTTKDGRKEMSLFVKQIIHNAERI 322
           QK++   N++    +  K+  +      +L+ +D +G  K  RK+    +++ +++A+ +
Sbjct: 164 QKVVAGGNYIELCNKDLKLMVESGKAQMELFRLDNKGIQKKSRKKFIAGIEKALNSAKNL 223

Query: 323 SIYSVEDIFAREALAYRELCPVF 391
           S  +V+  F        +L P+F
Sbjct: 224 SSKTVQTQFVSYP-ELAQLLPIF 245


>AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.11 protein.
          Length = 788

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 607 LLFQNQ*ETMESRQFFDSQFRKFRR 533
           +LFQ+  ETM+ R+ FD + R+ RR
Sbjct: 365 MLFQSTKETMDKREIFDEESRECRR 389


>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/30 (40%), Positives = 23/30 (76%)
 Frame = +2

Query: 98   NKMAQELPIKVKESIQKIIQRENFVSHDVE 187
            ++++QE+ IK K+S +K+I+R N +  D+E
Sbjct: 1061 DEISQEIVIKTKDSTEKLIKRWNQLELDLE 1090


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/30 (40%), Positives = 23/30 (76%)
 Frame = +2

Query: 98   NKMAQELPIKVKESIQKIIQRENFVSHDVE 187
            ++++QE+ IK K+S +K+I+R N +  D+E
Sbjct: 1061 DEISQEIVIKTKDSTEKLIKRWNQLELDLE 1090


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
            protein.
          Length = 3674

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/30 (40%), Positives = 23/30 (76%)
 Frame = +2

Query: 98   NKMAQELPIKVKESIQKIIQRENFVSHDVE 187
            ++++QE+ IK K+S +K+I+R N +  D+E
Sbjct: 1061 DEISQEIVIKTKDSTEKLIKRWNQLELDLE 1090


>AF003130-12|AAB54128.2|  175|Caenorhabditis elegans Hypothetical
           protein F55A12.2a protein.
          Length = 175

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 590 LVLEKQRPKYFDEVFKCLKQPFIFG 664
           + L   + K+F+ + KC K PF+FG
Sbjct: 52  MFLYDAKAKFFESIRKCPKSPFVFG 76


>AF003130-11|AAM15579.1|  250|Caenorhabditis elegans Hypothetical
           protein F55A12.2b protein.
          Length = 250

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 590 LVLEKQRPKYFDEVFKCLKQPFIFG 664
           + L   + K+F+ + KC K PF+FG
Sbjct: 52  MFLYDAKAKFFESIRKCPKSPFVFG 76


>AF003130-9|AAP68939.1|  307|Caenorhabditis elegans Hypothetical
           protein F55A12.2c protein.
          Length = 307

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 590 LVLEKQRPKYFDEVFKCLKQPFIFG 664
           + L   + K+F+ + KC K PF+FG
Sbjct: 109 MFLYDAKAKFFESIRKCPKSPFVFG 133


>Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical protein
            C11E4.6 protein.
          Length = 1170

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = -1

Query: 454  LFFYHFKSLVFRYSSFDLKIF-ENRTELSISQCFSCKDIFDRINTYTFCIV 305
            +F   FK+L+  Y  + +++  ++R +L+   CF  +D  +R   +TFC++
Sbjct: 1073 IFDETFKTLLDGYGVYTIRVVCQDRKDLNFF-CFVARDTENRFFCHTFCVL 1122


>Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical
           protein K07C5.3 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 159 EKTLYLTMLKQRKYIQMDLDLWATYML*MSEEQ 257
           EK+  +T L Q+K    DL LW T+++  S+++
Sbjct: 184 EKSAVITSLLQKKNFDGDLMLWLTFLIRESDQR 216


>AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical
           protein Y37B11A.2 protein.
          Length = 1133

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 515 YRMDVVSPKFAELAIKELARFHGLSLVLEKQRPKYFDEV 631
           +RM+ V+P    L    +     L L+LE Q   YFD V
Sbjct: 596 HRMNFVAPSITHLQRNMMGSPEQLQLILEPQSKVYFDPV 634


>AC006680-9|AAK72299.1|  353|Caenorhabditis elegans Hypothetical
           protein R13D7.2 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 329 YSVEDIFAREALAYRELCPVFEDLQIEAGIPENERFKMVKKQECTKD 469
           Y++ED+ A  A     +C    +   E    E ++FK + +Q+C KD
Sbjct: 59  YNLEDVTADIAKNMSYVCDRITNCFDEIPCDEAQKFKRIYEQKCEKD 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,708,406
Number of Sequences: 27780
Number of extensions: 386915
Number of successful extensions: 1230
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)