Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2p24
         (394 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0544 - 10435796-10435852,10435944-10436288,10436477-10436971     27   4.1  
03_05_0897 - 28605324-28605928,28606725-28606899                       27   4.1  
09_06_0242 - 21806370-21806483,21806574-21806660,21806865-218069...    27   5.4  
07_03_0078 - 13147741-13148913                                         27   5.4  
03_01_0530 + 3971990-3972331,3972415-3972489,3972608-3972661,397...    27   7.1  
12_01_0356 - 2707820-2708395,2708475-2708705,2709071-2709190,270...    26   9.4  
11_04_0345 + 16606739-16607055,16607129-16607462,16609029-16609631     26   9.4  

>09_02_0544 - 10435796-10435852,10435944-10436288,10436477-10436971
          Length = 298

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +3

Query: 33  AVYKGVPXDDKYEGSSPKIPAPKGFGTRHTQALVLFICLTVAYTXRAQLXVSMVAI 200
           A+  G   DD Y G +P +     F        + FIC T+A        ++MV I
Sbjct: 228 AIPGGYKADDHYNGGTPTLAGRYIFDAFTMANTIAFICSTLAIIHLMYSGMAMVCI 283


>03_05_0897 - 28605324-28605928,28606725-28606899
          Length = 259

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 21  PGEKAVYKGVPXDDKYEGSSPKIPAPKGFGTRHTQALVL-FICLTVAYT 164
           PG K ++KG+P DDKY         P      H ++L L ++CL    T
Sbjct: 175 PGAKNIFKGLP-DDKYIFPLHVFSGPDS-SPSHVRSLNLAYVCLNTTTT 221


>09_06_0242 -
           21806370-21806483,21806574-21806660,21806865-21806917,
           21806999-21807140,21807406-21807501,21808617-21808785,
           21808859-21808939,21809032-21809106,21810322-21810387,
           21811013-21811158,21811898-21812344
          Length = 491

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 306 YNWNKSTQEMILFAFFVXYTTMMIPMG 386
           Y WN ST  ++  +FF  Y    +P G
Sbjct: 163 YGWNSSTAGLVQSSFFWGYALSQLPGG 189


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 389 YTHRDHHGGVADEEREQYHFLSRF 318
           YTH+ HH   + +ER++  F+ RF
Sbjct: 146 YTHQRHHSNTSSQERDEV-FVPRF 168


>03_01_0530 +
           3971990-3972331,3972415-3972489,3972608-3972661,
           3972747-3972825,3972927-3973054,3973178-3973261,
           3973344-3973427,3973518-3973669,3973810-3973960,
           3974675-3974746,3975708-3975749
          Length = 420

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 335 HFLSRFIPVVRTINTPGADXFCNTAGILXGAYITA 231
           H +S  I   R+  TP  D  CNT  I  GA++ A
Sbjct: 156 HVVSHIINEYRSGRTPNPDVLCNTR-IKFGAFLEA 189


>12_01_0356 -
           2707820-2708395,2708475-2708705,2709071-2709190,
           2709281-2709401,2711588-2712027
          Length = 495

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 380 RDHHGGVADEEREQYHFLSRFIPVVR 303
           R+  GG ++EE E++ FL+  + ++R
Sbjct: 64  REEEGGESEEEEEEWSFLALLLALLR 89


>11_04_0345 + 16606739-16607055,16607129-16607462,16609029-16609631
          Length = 417

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
 Frame = -3

Query: 383 HRDHHGGV----ADEEREQYHFLSRF 318
           H DHHGGV     D  RE Y  + +F
Sbjct: 112 HHDHHGGVISDMGDMVREGYELVGKF 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,695,725
Number of Sequences: 37544
Number of extensions: 200276
Number of successful extensions: 438
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)