Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2p20
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...   257   1e-69
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...   211   8e-56
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    30   0.37 
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    29   0.65 
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    29   0.86 
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    28   1.5  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   4.6  
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom...    26   4.6  
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    26   6.0  

>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score =  257 bits (629), Expect = 1e-69
 Identities = 111/188 (59%), Positives = 143/188 (76%), Gaps = 2/188 (1%)
 Frame = +2

Query: 83  SSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMILD-LEPDNP 259
           S +   W+ WF  L+GNEFFCEVDED+I D+FNLTGL+ +VPHY ++LD+ILD L+PD P
Sbjct: 10  SDDSQYWVDWFLGLKGNEFFCEVDEDFIQDRFNLTGLSHEVPHYSQSLDLILDVLDPDLP 69

Query: 260 NE-SDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQPMLPIGLS 436
            E  D VE ++  LYGLIHARYILT +G+ +ML+K++  DFG+CPRV C  QPMLP+GLS
Sbjct: 70  EEVQDEVEASARHLYGLIHARYILTAQGLYKMLEKYKKCDFGHCPRVLCNGQPMLPVGLS 129

Query: 437 DVPAEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPDKRPKRPASQFVP 616
           D+     VKLYCPRC DVYTPKS RH   DGAYFGT FPHM+F V+P+    +   +++P
Sbjct: 130 DIAHTKSVKLYCPRCEDVYTPKSQRHASIDGAYFGTSFPHMLFQVYPELAVPKSQERYIP 189

Query: 617 RLYGFKIH 640
           R++GFK+H
Sbjct: 190 RIFGFKVH 197


>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score =  211 bits (515), Expect = 8e-56
 Identities = 98/193 (50%), Positives = 131/193 (67%), Gaps = 6/193 (3%)
 Frame = +2

Query: 89  EEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMILD-LEPDNPN- 262
           E VSWI+WFC+  G E+F EV ED+I D FNLTGLN  VP Y EALD+ILD   PD    
Sbjct: 37  ENVSWISWFCSRPGREYFVEVKEDFIEDLFNLTGLNLAVPFYNEALDLILDRTAPDTLEN 96

Query: 263 -ESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQPMLPIGLSD 439
            + D++E +++ILYGLIH RYI+T  G+ QM +K+  G FG CPRV C    +LP GLSD
Sbjct: 97  FDMDVIETSAQILYGLIHQRYIITRTGLHQMAEKYSMGIFGCCPRVNCCYTHVLPAGLSD 156

Query: 440 VPAEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPDKRPKR--PASQ-F 610
           +  +  V L+CP C+D+Y P SSR+ + DG++FG  FPH+ F  +P+  PKR  P  + +
Sbjct: 157 IVGKMPVMLFCPNCLDLYAPSSSRYKNIDGSFFGATFPHLFFESYPELNPKRSIPCGKIY 216

Query: 611 VPRLYGFKIHPLA 649
            PR+YGFK+  L+
Sbjct: 217 QPRIYGFKVSELS 229


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +2

Query: 173 KFNLTGLNEQVPHYREALDMILDLEPDNPNES 268
           K +L GLNE V +Y E LDM+L L  +N  E+
Sbjct: 877 KISLKGLNEGV-NYEEFLDMLLSLPAENNVET 907


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +2

Query: 122 LRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMILDL-EPDNPN-ESDLVEQASEI 295
           ++ N +F  +D+D I+DK +L   N+ + H  E  +   D  E  +P  + D+  + S I
Sbjct: 165 IQENPYFNNIDQDSISDK-SLPSTNQSLHHSEEDTESDNDFSESIHPEFDIDVFYKVSNI 223

Query: 296 LY 301
           LY
Sbjct: 224 LY 225


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = -3

Query: 293 SPMLVPPDQIHLDCLAPDPESC-----PAPLYNVELAHLSRLD*IYHLCSLRQPH 144
           SP  V   +  L  +AP+PES      P P    +  H+  L  + HLC LR+ +
Sbjct: 3   SPCTVKEKRSTLRSVAPNPESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDY 57


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +2

Query: 113 FCTLRGNEFFCEVDEDYINDKFN-LTGLNEQVPHYREALDMILDLEPDNPNESDLVEQAS 289
           +C +  NE    V+ D   D+ + LTG+++      E L  + + E   PNES+L     
Sbjct: 261 YCPVDHNEVSDGVETDIDVDQVDSLTGIHDHHIINNEQLIDLTEQEKKQPNESNLSNLKI 320

Query: 290 E-ILYGLIHARYILTNRGISQMLDK 361
           E +L+       ++  R I   LD+
Sbjct: 321 ETVLFSNCTVFLLIDTREIRSPLDR 345


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 390 GQYPKSPDWNLSNI*LMPLLVNMYRACI 307
           G+ P S   N S   L P L N+Y+AC+
Sbjct: 199 GKRPSSLQSNFSQFPLNPWLDNIYKACL 226


>SPAC1296.04 |mug65||spore wall assembly protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 445 GDVRQTNWQHRLAFTVYTW 389
           GDV ++ WQ+  +FT+  W
Sbjct: 76  GDVDESGWQYGFSFTMNNW 94


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 387 AHVYTVNANLCCQLVCRTSPPKRW*SCT 470
           A+V+    N   +    TSPP+RW +CT
Sbjct: 8   ANVHFEGQNQSSEGQLSTSPPRRWRNCT 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,142,560
Number of Sequences: 5004
Number of extensions: 68920
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)