Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2p20
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0465 + 18465966-18466206,18467424-18467443,18467444-184677...   250   1e-66
10_08_0955 + 21789616-21789778,21791622-21791688,21792285-217923...   152   3e-37
07_03_1312 - 25699811-25699912,25700410-25700548,25700655-257007...    31   1.2  
01_06_0347 + 28592552-28593502                                         30   2.1  
03_05_1020 + 29748135-29748281,29748411-29748794,29749127-29749627     28   6.3  
04_02_0007 + 8464923-8465155,8466037-8466591,8466645-8467662,846...    28   8.3  

>07_03_0465 +
           18465966-18466206,18467424-18467443,18467444-18467729,
           18468557-18468666,18468744-18468909,18469303-18469433
          Length = 317

 Score =  250 bits (611), Expect = 1e-66
 Identities = 105/192 (54%), Positives = 148/192 (77%), Gaps = 5/192 (2%)
 Frame = +2

Query: 80  SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMILDLEPDNP 259
           S  E+ SWI+W+C+LRGNEFFCEVD+DYI D FNL GL+ QVP+Y  ALD+ILD+E  + 
Sbjct: 124 SDGEDHSWISWYCSLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDIESSHG 183

Query: 260 N-----ESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQPMLP 424
           +     +++LVE A+E+LYGLIHARYILT++G++ ML+K+++ DFG CPRVYC  QP LP
Sbjct: 184 DMFTEEQNELVESAAEMLYGLIHARYILTSKGLAAMLEKYKNYDFGRCPRVYCCGQPCLP 243

Query: 425 IGLSDVPAEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPDKRPKRPAS 604
           +G SD+   + VK+YCP+C D+Y P+S    + DGAYFGT FPH+  M +   +P++P+ 
Sbjct: 244 VGQSDIHRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYEHLKPQKPSQ 303

Query: 605 QFVPRLYGFKIH 640
           ++VPR++GFK+H
Sbjct: 304 RYVPRVFGFKLH 315


>10_08_0955 +
           21789616-21789778,21791622-21791688,21792285-21792346,
           21792508-21792729,21792993-21793102,21793195-21793236,
           21793271-21793303
          Length = 232

 Score =  152 bits (368), Expect = 3e-37
 Identities = 65/110 (59%), Positives = 88/110 (80%), Gaps = 5/110 (4%)
 Frame = +2

Query: 80  SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMILDLEPDN- 256
           S  E+ SWI+WFC+LRGNEFFCE+D+DYI D FNL GL+ QVP+Y  ALD+ILD+E  N 
Sbjct: 113 SEGEDTSWISWFCSLRGNEFFCEIDDDYIQDDFNLCGLSNQVPYYDYALDLILDIESSNG 172

Query: 257 ----PNESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPR 394
                 +++L+E ++E+LYGLIHARYILT++G++ ML+KF++ DFG CPR
Sbjct: 173 DVFTEEQNELIESSAEMLYGLIHARYILTSKGLAAMLEKFKNYDFGRCPR 222


>07_03_1312 -
           25699811-25699912,25700410-25700548,25700655-25700722,
           25700803-25700895,25706303-25706902
          Length = 333

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 218 EALDMILDLEPDNPNESDLVEQASEILYGLIHARYILTNRGISQ 349
           EA D+++   P+    SD +++ +E+LY LI  R +     ISQ
Sbjct: 188 EAADLLVPRRPEEVMGSDYIQEKTELLYALISERQLSDLPIISQ 231


>01_06_0347 + 28592552-28593502
          Length = 316

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
 Frame = +2

Query: 80  SSSEEVSWIAWF-------CTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMIL 238
           +   E++W+  F       CTL G +FFC+      N K + TG   +V +Y   ++M  
Sbjct: 254 NEKREINWLFLFLGQMLGCCTLEGLKFFCK------NTKNHCTGAKTRVLYY-AYIEMCR 306

Query: 239 DLEPDNP 259
            L+P  P
Sbjct: 307 QLDPQGP 313


>03_05_1020 + 29748135-29748281,29748411-29748794,29749127-29749627
          Length = 343

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = -1

Query: 703 RQAALRRLGVRSRLLD 656
           R+ ALRRLGVR+R+LD
Sbjct: 260 RRGALRRLGVRARVLD 275


>04_02_0007 +
           8464923-8465155,8466037-8466591,8466645-8467662,
           8467768-8468485,8468651-8468937
          Length = 936

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 2   NFFSLPLSKRCILPSSVANQGTKRKMSSSEEVSWIAWF 115
           +   LP  KR  +P   +N GT +K+S S+ +    WF
Sbjct: 622 SMLGLPQPKRRRVPIPPSNNGTLKKVSYSDIIKATNWF 659


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,091,630
Number of Sequences: 37544
Number of extensions: 518159
Number of successful extensions: 1295
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)