Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2p20
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75713-8|CAB00056.1|  234|Caenorhabditis elegans Hypothetical pr...   353   7e-98
Z75713-9|CAB00053.1|  235|Caenorhabditis elegans Hypothetical pr...   352   1e-97
M73827-1|AAA27983.1|  234|Caenorhabditis elegans casein kinase I...   349   9e-97
Z70211-1|CAA94157.2|  299|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z83316-8|CAB54186.1|  409|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U41510-6|AAK39382.1|  454|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U14635-10|AAM81107.1|  552|Caenorhabditis elegans Abnormal dye f...    28   5.7  
U14635-9|AAK84493.1|  574|Caenorhabditis elegans Abnormal dye fi...    28   5.7  
Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon gu...    28   7.5  
U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon gu...    28   7.5  
AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.      28   7.5  
AF067944-2|AAY86264.1|   97|Caenorhabditis elegans Hypothetical ...    27   9.9  
AF047656-13|AAC05105.1|  313|Caenorhabditis elegans Collagen pro...    27   9.9  

>Z75713-8|CAB00056.1|  234|Caenorhabditis elegans Hypothetical
           protein T01G9.6a protein.
          Length = 234

 Score =  353 bits (868), Expect = 7e-98
 Identities = 157/200 (78%), Positives = 176/200 (88%), Gaps = 4/200 (2%)
 Frame = +2

Query: 77  MSSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMILDLEPD- 253
           MSSSEEVSWI WFC LRGNEFFCEVDE+YI D+FNLTGLNEQVP YR+ALDMILDLEPD 
Sbjct: 1   MSSSEEVSWITWFCGLRGNEFFCEVDEEYIQDRFNLTGLNEQVPKYRQALDMILDLEPDD 60

Query: 254 ---NPNESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQPMLP 424
              N   +DLVEQA+E+LYGLIHARYILTNRGISQM++K++  DFG CPRVYCE QPMLP
Sbjct: 61  IEDNATNTDLVEQAAEMLYGLIHARYILTNRGISQMVEKWRDHDFGVCPRVYCENQPMLP 120

Query: 425 IGLSDVPAEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPDKRPKRPAS 604
           IGLSDVP EAMVKLYCPRC DV+ P+SSRH HTDG+YFGTGFPHM+F VHPD RP+RP +
Sbjct: 121 IGLSDVPGEAMVKLYCPRCNDVFVPRSSRHQHTDGSYFGTGFPHMLFFVHPDLRPRRPVT 180

Query: 605 QFVPRLYGFKIHPLAYQIQQ 664
           QFVP+LYGFKIHP+AY  Q+
Sbjct: 181 QFVPKLYGFKIHPVAYGGQE 200


>Z75713-9|CAB00053.1|  235|Caenorhabditis elegans Hypothetical
           protein T01G9.6b protein.
          Length = 235

 Score =  352 bits (866), Expect = 1e-97
 Identities = 157/201 (78%), Positives = 176/201 (87%), Gaps = 5/201 (2%)
 Frame = +2

Query: 77  MSSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMILDLEP-- 250
           MSSSEEVSWI WFC LRGNEFFCEVDE+YI D+FNLTGLNEQVP YR+ALDMILDLEP  
Sbjct: 1   MSSSEEVSWITWFCGLRGNEFFCEVDEEYIQDRFNLTGLNEQVPKYRQALDMILDLEPED 60

Query: 251 ---DNPNESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQPML 421
              DN   +DLVEQA+E+LYGLIHARYILTNRGISQM++K++  DFG CPRVYCE QPML
Sbjct: 61  DIEDNATNTDLVEQAAEMLYGLIHARYILTNRGISQMVEKWRDHDFGVCPRVYCENQPML 120

Query: 422 PIGLSDVPAEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPDKRPKRPA 601
           PIGLSDVP EAMVKLYCPRC DV+ P+SSRH HTDG+YFGTGFPHM+F VHPD RP+RP 
Sbjct: 121 PIGLSDVPGEAMVKLYCPRCNDVFVPRSSRHQHTDGSYFGTGFPHMLFFVHPDLRPRRPV 180

Query: 602 SQFVPRLYGFKIHPLAYQIQQ 664
           +QFVP+LYGFKIHP+AY  Q+
Sbjct: 181 TQFVPKLYGFKIHPVAYGGQE 201


>M73827-1|AAA27983.1|  234|Caenorhabditis elegans casein kinase II
           beta subunit protein.
          Length = 234

 Score =  349 bits (859), Expect = 9e-97
 Identities = 156/200 (78%), Positives = 175/200 (87%), Gaps = 4/200 (2%)
 Frame = +2

Query: 77  MSSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMILDLEPD- 253
           MSSSEEVSWI WFC LRGNEFFCEVDE+YI D+FNLTGLNEQVP YR+ALDMILDLEPD 
Sbjct: 1   MSSSEEVSWITWFCGLRGNEFFCEVDEEYIQDRFNLTGLNEQVPKYRQALDMILDLEPDD 60

Query: 254 ---NPNESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQPMLP 424
              N   +DLVEQA+E+LYGLIHARYILTNRGISQM++K++  DFG CPRVYCE QPMLP
Sbjct: 61  IEDNATNTDLVEQAAEMLYGLIHARYILTNRGISQMVEKWRDHDFGVCPRVYCENQPMLP 120

Query: 425 IGLSDVPAEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPDKRPKRPAS 604
           IGLSDVP EAMVKLYCPRC  V+ P+SSRH HTDG+YFGTGFPHM+F VHPD RP+RP +
Sbjct: 121 IGLSDVPGEAMVKLYCPRCNMVFVPRSSRHQHTDGSYFGTGFPHMLFFVHPDLRPRRPVT 180

Query: 605 QFVPRLYGFKIHPLAYQIQQ 664
           QFVP+LYGFKIHP+AY  Q+
Sbjct: 181 QFVPKLYGFKIHPVAYGGQE 200


>Z70211-1|CAA94157.2|  299|Caenorhabditis elegans Hypothetical
           protein K11E4.1 protein.
          Length = 299

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +2

Query: 68  KRKMSSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHY 214
           + K   +E++ +  +     GNE F    +  + DKFN+   N+Q+P +
Sbjct: 170 EEKWWPAEQMFYFGYGSPRCGNEDFAYYVDSSLADKFNIVWFNDQIPEF 218


>Z83316-8|CAB54186.1|  409|Caenorhabditis elegans Hypothetical
           protein B0379.7 protein.
          Length = 409

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 290 PMLVPPDQIHLDCLAPDPESCPAPL 216
           P   PP Q+     AP PES PAP+
Sbjct: 56  PAAAPPQQLEQPTPAPAPESAPAPV 80


>U41510-6|AAK39382.1|  454|Caenorhabditis elegans Hypothetical
           protein ZC449.1 protein.
          Length = 454

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +2

Query: 2   NFFSLPLSKRCILPSSVANQGTKRKMSSSEEVSWIAWFCTLRGNEFFCEVDEDYI 166
           N+F  P+ K+C L   +A      K+  +E+V +   FC L  + F C+ DE +I
Sbjct: 267 NYF--PVEKKCELYGILAEPHGSGKLLENEKVIYAEKFC-LPESPFVCQNDEIFI 318


>U14635-10|AAM81107.1|  552|Caenorhabditis elegans Abnormal dye
           filling protein 13,isoform b protein.
          Length = 552

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 158 DYINDKFNLTGLNEQVPHYREALDMILDLEPDNPN 262
           D + D+ +L G+N    HY++A+++   +   +PN
Sbjct: 127 DTLEDRLSLAGVNYSRMHYQDAIEVYTSVLQTSPN 161


>U14635-9|AAK84493.1|  574|Caenorhabditis elegans Abnormal dye
           filling protein 13,isoform a protein.
          Length = 574

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 158 DYINDKFNLTGLNEQVPHYREALDMILDLEPDNPN 262
           D + D+ +L G+N    HY++A+++   +   +PN
Sbjct: 149 DTLEDRLSLAGVNYSRMHYQDAIEVYTSVLQTSPN 183


>Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical
           protein F02E9.4b protein.
          Length = 1507

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 194 NEQVPHYREALDMILDLEPDNPNESDLVEQASEILY 301
           +  VP Y   L+++ D         D++EQ +E+LY
Sbjct: 301 SSDVPVYHRFLEIMKDFRAQRIETPDVIEQVAELLY 336


>Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical
           protein F02E9.4a protein.
          Length = 1505

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 194 NEQVPHYREALDMILDLEPDNPNESDLVEQASEILY 301
           +  VP Y   L+++ D         D++EQ +E+LY
Sbjct: 301 SSDVPVYHRFLEIMKDFRAQRIETPDVIEQVAELLY 336


>U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon
           guidance protein 3,isoform b protein.
          Length = 1273

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = -3

Query: 485 PCSAGSTASPS---LRRGRPTNQLAA*VGIHS---IHVGNIQNPQTGTY 357
           PC A    +P    LR G P +   + +  HS   +H+ +++ P TG Y
Sbjct: 445 PCQASGKPTPGISWLRDGLPIDITDSRISQHSTGSLHIADLKKPDTGVY 493


>U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon
           guidance protein 3,isoform a protein.
          Length = 1269

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = -3

Query: 485 PCSAGSTASPS---LRRGRPTNQLAA*VGIHS---IHVGNIQNPQTGTY 357
           PC A    +P    LR G P +   + +  HS   +H+ +++ P TG Y
Sbjct: 445 PCQASGKPTPGISWLRDGLPIDITDSRISQHSTGSLHIADLKKPDTGVY 493


>AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.
          Length = 1273

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = -3

Query: 485 PCSAGSTASPS---LRRGRPTNQLAA*VGIHS---IHVGNIQNPQTGTY 357
           PC A    +P    LR G P +   + +  HS   +H+ +++ P TG Y
Sbjct: 445 PCQASGKPTPGISWLRDGLPIDITDSRISQHSTGSLHIADLKKPDTGVY 493


>AF067944-2|AAY86264.1|   97|Caenorhabditis elegans Hypothetical
           protein K10C9.9 protein.
          Length = 97

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +2

Query: 38  LPSSVANQGTKRKMSSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQ 202
           +P++VA   T+ K +S EE       C +R   F  ++DE ++N+K +L    ++
Sbjct: 23  IPTTVA---TETKCTSQEEAVRAVQACIMRLGIFLHQLDELHMNNKTDLADYKKE 74


>AF047656-13|AAC05105.1|  313|Caenorhabditis elegans Collagen
           protein 116 protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 398 YCECQPMLPIGLSDVPAE 451
           YC+C P  PIG +D  +E
Sbjct: 286 YCQCPPRTPIGSADADSE 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,636,241
Number of Sequences: 27780
Number of extensions: 403175
Number of successful extensions: 1065
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)