Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2p13
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    32   0.39 
05_06_0288 + 26954222-26954446,26954995-26955124,26955221-269554...    28   6.3  
02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,465...    28   6.3  

>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +1

Query: 337 LFRKRLHKVFSKNSEETDPQKIQIMVKHGEFVVKEIEALYKLKKYRAMKRR 489
           L  ++LH + S  S   DPQ    +    EF+ +++EA+ K+ +Y A  RR
Sbjct: 188 LVNEKLHNLHSVASRCNDPQLTDFV--ESEFLEEQVEAIKKISEYVAQLRR 236


>05_06_0288 +
           26954222-26954446,26954995-26955124,26955221-26955414,
           26955638-26956273
          Length = 394

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 93  KEKLLICSTR-LTNRCIETSENIGIC 167
           KE+ L+C+    T RCIE ++ +G+C
Sbjct: 151 KEQALVCAEEDRTLRCIEVAKTLGVC 176


>02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,
            4658808-4658873,4658954-4659076,4659562-4659629,
            4659703-4659766,4659994-4660135,4660218-4660306,
            4660574-4660637,4660870-4661021,4661124-4661261,
            4661742-4661867,4661971-4662183,4662343-4662426,
            4662583-4662742,4662993-4663126,4664047-4664136,
            4664313-4664471,4665528-4665611,4666170-4666289,
            4666338-4666391,4666899-4666945,4667556-4667598,
            4667730-4668586,4668845-4668899
          Length = 1081

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 4/110 (3%)
 Frame = +1

Query: 169  FLILTNWIRVWTMNSYL*ITF*KSKIYIMAQPHRKAVLNLYKTLLYLGRDWPQGFDLFRK 348
            FL+L   + V   N +L     K K Y+  + + K V      L+Y        F +  K
Sbjct: 835  FLVLWEMVVVHPDNDFLEDITGKLKEYVKEEMNVKMVTACSDPLVYSSLRAEPNFSVLGK 894

Query: 349  RLHKVFSKNSEET---DPQKIQIMVKHGE-FVVKEIEALYKLKKYRAMKR 486
            RL K   K S E       +I    + GE F    +  L  +K +R  KR
Sbjct: 895  RLGKDMGKISNEVKKMTQDQILTFEESGEIFFGSHLLTLEDIKVFREFKR 944


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,195,242
Number of Sequences: 37544
Number of extensions: 260865
Number of successful extensions: 647
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)