Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2p13
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032618-5|CAE17991.1|   83|Caenorhabditis elegans Hypothetical ...    80   1e-15
U41534-5|AAB47597.1|  163|Caenorhabditis elegans Hypothetical pr...    32   0.35 
U28971-6|AAA68380.2|  300|Caenorhabditis elegans Hypothetical pr...    32   0.46 
AF067937-7|AAN84819.1|  392|Caenorhabditis elegans Hypothetical ...    30   1.4  
AF067937-6|AAF99915.1|  426|Caenorhabditis elegans Hypothetical ...    30   1.4  
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z83221-2|CAB05708.1|  444|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U28971-7|ABC48263.1|  309|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AL032618-5|CAE17991.1|   83|Caenorhabditis elegans Hypothetical
           protein Y42A5A.5 protein.
          Length = 83

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 35/64 (54%), Positives = 47/64 (73%)
 Frame = +1

Query: 307 LGRDWPQGFDLFRKRLHKVFSKNSEETDPQKIQIMVKHGEFVVKEIEALYKLKKYRAMKR 486
           +G+++P G   F  RL   FSKN E  D ++++ ++  GEFVVKEIEALY L+KYRAMK+
Sbjct: 1   MGKEYPGGSKWFHDRLKLAFSKNKEVQDSKQVEQLIARGEFVVKEIEALYSLRKYRAMKQ 60

Query: 487 RYYD 498
           RYYD
Sbjct: 61  RYYD 64


>U41534-5|AAB47597.1|  163|Caenorhabditis elegans Hypothetical
           protein C16A3.5 protein.
          Length = 163

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = +1

Query: 244 IYIMAQPHRKAVLNLYKTLLYLGRDWPQGFDL---FRKRLHKV-FSKNSEETDPQKIQIM 411
           ++  A  HR+ V  LYK  L    +W  G +L   F+K + +  F  N++E D +K QI+
Sbjct: 7   MFTKALSHRQKVTRLYKRCLREVDNWYGGNNLEVRFQKCIIRARFDANADEVDTRKSQIL 66

Query: 412 VKHG 423
           +  G
Sbjct: 67  LADG 70


>U28971-6|AAA68380.2|  300|Caenorhabditis elegans Hypothetical
           protein B0244.5 protein.
          Length = 300

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = -3

Query: 492 ISSLHCSVLLQLI*CFNFFNNKLTMFYHYLYFLWISFFTILAKYFMKPFSKQVETLRPI- 316
           ISSL  S ++ ++      +   T+++ +     +SF+++L  Y        + T+RPI 
Sbjct: 90  ISSLSASSIMMVLRLLKMLSTSFTVYFLFFLIDDLSFYSLLGSYVGSTLLLYLATVRPIF 149

Query: 315 -STQIEERFI 289
            S QI  R +
Sbjct: 150 YSIQISVRIV 159


>AF067937-7|AAN84819.1|  392|Caenorhabditis elegans Hypothetical
           protein F22F7.1b protein.
          Length = 392

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 423 TMFYHYLYFLWISFFTILAKYFMKPFSKQV 334
           + FY YL  LWI F +I  KY   PF++++
Sbjct: 276 SQFYGYLIGLWIMFLSIFVKY---PFTRRI 302


>AF067937-6|AAF99915.1|  426|Caenorhabditis elegans Hypothetical
           protein F22F7.1a protein.
          Length = 426

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 423 TMFYHYLYFLWISFFTILAKYFMKPFSKQV 334
           + FY YL  LWI F +I  KY   PF++++
Sbjct: 276 SQFYGYLIGLWIMFLSIFVKY---PFTRRI 302


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
           protein C18H2.1 protein.
          Length = 1770

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
 Frame = +1

Query: 271 KAVLNLYKTLLYLGRDWPQGFDLFRKRLHKVFSKNSEET----DPQKIQIMVKHGEFVVK 438
           + V  L KT +  G ++ +      K+ HK    +S       DPQK+ + +  G FV+K
Sbjct: 583 ECVSRLRKTAID-GENFVKDIQKTYKKSHKTLESDSSPVLKLEDPQKVVLTLGRGMFVLK 641

Query: 439 EI-EAL-YKLK 465
           E+ EAL Y+L+
Sbjct: 642 EMTEALTYRLR 652


>Z83221-2|CAB05708.1|  444|Caenorhabditis elegans Hypothetical
           protein C49A1.3 protein.
          Length = 444

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 162 YLCFLTFQYSDLSDAYYKLITFLLRFLTLSINSFLV 55
           ++C  T Q+ D+ D Y +L+  L   LT+    F+V
Sbjct: 261 FICLFTRQHLDMDDTYLELVFSLFPLLTIMQFIFMV 296


>U28971-7|ABC48263.1|  309|Caenorhabditis elegans Hypothetical
           protein B0244.4 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/59 (22%), Positives = 28/59 (47%)
 Frame = -3

Query: 492 ISSLHCSVLLQLI*CFNFFNNKLTMFYHYLYFLWISFFTILAKYFMKPFSKQVETLRPI 316
           IS+L   V++  +       +  T+++ +     +SF+++L  Y        + T+RPI
Sbjct: 90  ISALTACVIMLALRILQLITSSFTIYFLFFLIDDLSFYSLLGSYVGSAILLYLATIRPI 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,322,565
Number of Sequences: 27780
Number of extensions: 279659
Number of successful extensions: 779
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)