Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2p08
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885...    30   1.7  
08_01_0713 - 6307737-6308789,6308886-6309056                           29   3.8  
10_02_0078 - 4992019-4992594,4993156-4993248,4995984-4996202,499...    29   5.1  
03_02_0377 - 7898075-7898605,7900782-7901000,7901079-7901142,790...    29   5.1  
10_08_1065 - 22640931-22641114,22641213-22641334,22641512-226416...    28   8.8  
04_01_0252 - 3329712-3331061                                           28   8.8  
03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494...    28   8.8  

>05_07_0328 + 29286109-29286120,29286982-29287146,29288427-29288589,
            29288625-29288903,29289047-29289122,29289725-29289787,
            29292116-29292164,29292413-29292504,29293017-29293068,
            29293209-29293271,29293382-29293431,29293941-29294016,
            29294444-29294656,29294763-29294869,29294966-29295074,
            29295489-29295689,29295773-29296033,29296154-29296171,
            29296287-29296397,29296755-29297030,29297108-29297382,
            29297814-29298165,29298371-29298655,29298715-29299261,
            29301658-29301781,29301871-29301946,29302062-29302136,
            29302300-29302353,29302833-29302892,29302977-29303093,
            29303228-29303361,29303480-29303682,29303879-29303976,
            29304358-29304461,29304537-29304702,29304803-29304925,
            29305047-29305129,29305217-29305358,29305523-29305549,
            29305784-29305854,29305930-29306518
          Length = 2046

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 572  DQVNKGCNLCTCKVDNDNNAYWSCTQDTCMMSED 673
            DQ   GC++ +C   +DNN Y+ C     ++ E+
Sbjct: 984  DQYEHGCSIISCSFSDDNNVYY-CVGTAYVLPEE 1016


>08_01_0713 - 6307737-6308789,6308886-6309056
          Length = 407

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/66 (21%), Positives = 27/66 (40%)
 Frame = +2

Query: 488 CPDYKKVCSPPQITSVSCEYEQQTYAPDDQVNKGCNLCTCKVDNDNNAYWSCTQDTCMMS 667
           C DY + C+P Q+ + +  Y        + ++    LC    ++D      C   TC   
Sbjct: 58  CSDYCRDCNPSQVGTSTTYYNASMSISYNPLSCDHPLCGAGDNHDQQVLAECMDGTCTFK 117

Query: 668 EDLVND 685
            D +++
Sbjct: 118 VDSLDN 123


>10_02_0078 -
           4992019-4992594,4993156-4993248,4995984-4996202,
           4996282-4996345,4996429-4996485,4996573-4996671,
           4997296-4997327
          Length = 379

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 384 INAATIEKTIAQCRYWVLSAIAT 452
           +N   IEK I  C+YW+L A+ T
Sbjct: 29  LNKPEIEKLIFWCQYWILVALLT 51


>03_02_0377 -
           7898075-7898605,7900782-7901000,7901079-7901142,
           7901226-7901282,7901373-7901471,7901744-7901793,
           7902378-7902422,7902967-7903062
          Length = 386

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 384 INAATIEKTIAQCRYWVLSAIATSSVITQDTTMTAVP 494
           +N   IE+ I  C+YW+L A+ T      D T++ +P
Sbjct: 82  LNKPEIEQLIFWCQYWILVALMTVMERFGDFTISWLP 118


>10_08_1065 -
           22640931-22641114,22641213-22641334,22641512-22641633,
           22663988-22664051,22664789-22664878,22665039-22665125,
           22665221-22665363,22665400-22665421
          Length = 277

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 545 YEQQTYAPDDQVNKGCNLCTCKVDNDNNAYWSCTQDTCMMSEDLVNDVN 691
           Y  +  A D Q   GCNL  CK     N+      D  +  +D+ +DV+
Sbjct: 110 YTDRRSAADQQQAGGCNLPICKTTKQGNS----VDDDAIADDDVWDDVS 154


>04_01_0252 - 3329712-3331061
          Length = 449

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +2

Query: 515 PPQITSVSCEYEQQTYAPDDQVNKGCNLCTCKVDNDNNAYWSCTQDTCMMSEDLVNDVNQ 694
           P QIT  S  Y Q+    +D+ N   N  T   DN  N + SC     +     VN ++Q
Sbjct: 271 PLQITGSSVVY-QEFLPQEDERNADNNNSTTNADNTTNHHGSCPIHDHLDQACNVNSIHQ 329


>03_05_0780 +
           27646936-27647084,27647168-27647289,27649380-27649458,
           27650346-27650427,27650483-27650600,27650695-27651050,
           27651404-27652222,27652846-27653265,27653426-27653437
          Length = 718

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/65 (24%), Positives = 27/65 (41%)
 Frame = +2

Query: 374 PDDNKCCYNRKDDCSVPILGTLCYCDEFCDHTRHHDDCCPDYKKVCSPPQITSVSCEYEQ 553
           P  ++CC++R + C+V  +         C      DD       V  PP++ S +  Y  
Sbjct: 526 PPTSRCCHHRYEICAVATVAVAP-----CSRAVVADDVAAS-SAVPPPPRVCSATAGYRY 579

Query: 554 QTYAP 568
             Y+P
Sbjct: 580 PKYSP 584


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,714,397
Number of Sequences: 37544
Number of extensions: 380972
Number of successful extensions: 907
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)