Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2p07
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   3.4  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   4.5  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   5.9  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    25   5.9  

>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 85  WLWPTLKTQLR*WKTLTQETATN 153
           W WPT  + LR    +T ET T+
Sbjct: 375 WFWPTFASFLRESDVVTTETGTS 397


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 403 FFFKHYNMFIYLFR*HKFI*NFEI 332
           FF K Y+ F+++FR + FI +FE+
Sbjct: 188 FFLKQYHNFMFVFRDY-FIRDFEL 210


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = -1

Query: 311  VINFLRYSLLPTASTRERGRVHVI 240
            ++NFL++S +PT S ++R  VH++
Sbjct: 1179 ILNFLKFSGIPTQS-KKRLEVHML 1201


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 69  FVLALLAMANAQDPVKVVENADSGNGYEP 155
           F+  +L++A  + P  V  + D+G GY P
Sbjct: 223 FLFPILSLAFDKGPAAVPVDQDAGMGYRP 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,515,601
Number of Sequences: 5004
Number of extensions: 27488
Number of successful extensions: 55
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)