Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2p07
         (404 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116...    27   5.6  
03_05_0629 + 26248960-26249236,26249766-26249894,26250291-262508...    27   7.5  

>12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,
            1162360-1162620,1162729-1162916,1164127-1164166
          Length = 1162

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +1

Query: 181  ILPXITTLMETATNLSTTVHIT-WTLPLSLVLAVGSKEY--LRKLITKXC 321
            ILP +TTL+E+   L++  HI   + P+  VL    ++   LR L  + C
Sbjct: 1061 ILPVLTTLLESMQGLTSLRHINLMSCPMLTVLPESLRQLSALRSLYMQSC 1110


>03_05_0629 +
           26248960-26249236,26249766-26249894,26250291-26250847,
           26250933-26251250
          Length = 426

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 402 FFLSTTICLFIYSVDINSYEILKYIVNTXFRY*FSKIFFTSHREHQ 265
           FFL T +  ++Y  +  +  +L ++  T  R+ FS  F+  +  HQ
Sbjct: 230 FFLWTGVFFYLYGWEFLNEALLYHLSRTDPRHNFSIYFYHIYLHHQ 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,832,590
Number of Sequences: 37544
Number of extensions: 189078
Number of successful extensions: 422
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)