Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2p07
         (404 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed ...    31   0.24 
AF025471-4|AAB71063.1|  151|Caenorhabditis elegans Hypothetical ...    29   1.3  
Z81520-4|CAE17808.1|  181|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z82262-1|CAB05151.2|  361|Caenorhabditis elegans Hypothetical pr...    28   2.2  
Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical pr...    27   5.1  

>AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed
           with polycystins protein4 protein.
          Length = 402

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +1

Query: 79  LCWLWPTLKTQLR*WKTLTQETATNLLTTARTSLILPXITTLMETATNLSTTVHITWT 252
           LC+LW  L T      T T  T T+ + T  T++++   TT        +TTV +  T
Sbjct: 179 LCYLWVPLTTTTT--TTTTTTTTTSPMNTTTTTVLINGTTTTTVPTNETTTTVPLNGT 234


>AF025471-4|AAB71063.1|  151|Caenorhabditis elegans Hypothetical
           protein R52.6 protein.
          Length = 151

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +1

Query: 127 TLTQETATNLLTTARTSLILPXITTLMETATNLSTTVHITWTLPLSLV 270
           TL  E  T ++TT  TS +   +   M  AT       + WTL L  V
Sbjct: 47  TLPYEETTEMMTTMETSTMTEKVCPEMPAATACMDLTTLGWTLELGEV 94


>Z81520-4|CAE17808.1|  181|Caenorhabditis elegans Hypothetical
           protein F31B9.4 protein.
          Length = 181

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +1

Query: 94  PTLKTQLR*WKTLTQET--ATNLLTTARTSLILPXITTLMETATNLSTTVHITWTLP 258
           P + T +R   T T  T  A N+ TT  T+ I P   T     T  +TTV  T T P
Sbjct: 17  PVITTTIRPNSTTTTTTSPAPNITTTTTTTTIAPPTNTTTTILTT-TTTVTTTTTSP 72


>Z82262-1|CAB05151.2|  361|Caenorhabditis elegans Hypothetical
           protein C43F9.4 protein.
          Length = 361

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 57  FFMIFVLALLAMANAQD---PVKVVENADSGNGYEPIDNRPYI 176
           F++IF++ ++ M +  D   P+   +N D  N +EP   RP+I
Sbjct: 29  FWVIFIVIIVVMTHFNDYSEPIVPWDNCDMNNTWEP-TTRPFI 70


>Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 127 TLTQETATNLLTTARTS-LILPXITTLMETATNLSTTVHITWTLPL 261
           T T  T T   TT  T  +I P       + T  STT  + +TLP+
Sbjct: 420 TTTTTTTTEAPTTTTTEPIIYPPANFKKASKTTTSTTTEMIYTLPV 465


>Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 127 TLTQETATNLLTTARTS-LILPXITTLMETATNLSTTVHITWTLPL 261
           T T  T T   TT  T  +I P       + T  STT  + +TLP+
Sbjct: 420 TTTTTTTTEAPTTTTTEPIIYPPANFKKASKTTTSTTTEMIYTLPV 465


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,415,134
Number of Sequences: 27780
Number of extensions: 158593
Number of successful extensions: 379
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)