Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2p06
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...    26   2.2  
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...    26   2.9  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   2.9  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   3.8  
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    25   3.8  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    25   5.0  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.0  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   5.0  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    25   6.6  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    24   8.7  
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    24   8.7  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    24   8.7  

>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -2

Query: 300 HIESQSQLEKPPPE*VKNVYSIYIIKLLLCVVHRRRSRFN 181
           H   +SQ  KP  E   NVY   ++KL   +  R  SRFN
Sbjct: 8   HHVKKSQRSKPASE---NVYLKLLVKLYRFLARRTDSRFN 44


>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -2

Query: 300 HIESQSQLEKPPPE*VKNVYSIYIIKLLLCVVHRRRSRFN 181
           H   +SQ  KP  E   NVY   ++KL   +  R  SRFN
Sbjct: 8   HHVRKSQRSKPASE---NVYLKLLVKLYRFLARRTDSRFN 44


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 100 AKMRKQIHTIVLPTVVVIFLLICVYVYIKTRP 195
           +K+ K +  +      + FLLIC++ YI++ P
Sbjct: 476 SKIVKPVSVVKRVAFNIPFLLICIFFYIQSSP 507


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 76  KRERKQEFAKMRKQIHTIVLPTVVVIFLLIC 168
           KRE  ++F+K+ K+I  I   T V   +++C
Sbjct: 639 KREFHKDFSKLYKEILDIFNSTTVNFLMILC 669


>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 49  GPVKETARQKRERKQEFAKMRKQIHTIVLPTVVVIFLLICVY 174
           GP  ETA    ER+QEF  +   I++++   + V+ + +  +
Sbjct: 62  GPT-ETANPNVERRQEFKDLHPNIYSLLRLLIAVLAVSVVFF 102


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 384 HLDMLGKTWNVSVINIV*TYSTKSLTCYHIESQSQ 280
           H D++   W  S+     T  TK LTC +I S+ +
Sbjct: 221 HSDVMHPKWVHSLFEGTLTSETKCLTCENITSRDE 255


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +3

Query: 90  TRIRENAKTNS--YDCVTNCRCNIF 158
           T +  +A TNS  YDC+ N  CN F
Sbjct: 119 TPVECSASTNSHSYDCLWNFSCNSF 143


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 181 YTRTHKLIKILQRQLVTQSYEFVFAFS 101
           + +T  L  ILQ  +VT  ++ V+AFS
Sbjct: 688 FIKTQGLNSILQLDIVTHPFKSVYAFS 714


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 253 DLFWGWFFKL*LGLNVVASERLCAICLYYVY-YRNIP 360
           D+   W   + LG+  +       +C YY+Y Y+ IP
Sbjct: 441 DILATWKLLVALGMTPILYSFYALLCCYYIYSYKLIP 477


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -2

Query: 324 STKSLTCYHIESQSQLEKPPPE*VK 250
           S  ++ CY +++ + ++ PPP  +K
Sbjct: 557 SISNICCYMMDASTHIDLPPPAIIK 581


>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 308 LATTLSPNHNLKNHPQNKS 252
           LA++ + NHN   +PQN+S
Sbjct: 180 LASSNNKNHNQSKNPQNRS 198


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 335 YKHIAQSLSLATTLSPNHNLKNHPQNKSRM 246
           YK     +S   TL   H++K HP NKSR+
Sbjct: 428 YKDYPTVVSRIRTL---HHVKLHPDNKSRL 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,636,854
Number of Sequences: 5004
Number of extensions: 31903
Number of successful extensions: 94
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)