Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2p06
         (430 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0074 + 519401-519512,519513-519548,519647-519706,519785-51...    28   2.8  
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081...    27   4.9  
07_03_0740 - 21102015-21102287,21102402-21102555,21102647-211028...    27   8.5  

>02_01_0074 +
           519401-519512,519513-519548,519647-519706,519785-519877,
           519968-520033,520146-520223,520300-520407,520478-520554,
           520632-520706,520792-520799,520981-521098,521199-521625,
           521627-521661
          Length = 430

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 48  GSRQRDS*AEKGKKTRIRENAKT 116
           G+ QRDS  +KGK+  + EN KT
Sbjct: 149 GNTQRDSEIDKGKRIAVIENVKT 171


>11_08_0032 -
           27807489-27807497,27807641-27807684,27808046-27808168,
           27810770-27810983,27811382-27811530,27811719-27812618,
           27812964-27814659
          Length = 1044

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 112 KQIHTIVLPTVVVIFLLICVYVYI 183
           K +  IVLPTV+V F  I V++Y+
Sbjct: 633 KHLLKIVLPTVIVAFGAIVVFLYL 656


>07_03_0740 -
           21102015-21102287,21102402-21102555,21102647-21102884,
           21103008-21103218,21103303-21103442,21103537-21103665,
           21104120-21104960
          Length = 661

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +1

Query: 52  PVKETARQKRERKQEFAKMRKQIHTIVLPTVVVIFLLICVYVYIKTRP 195
           PV  T       ++   K+ + +  I+LP +  + L++C  V+ + RP
Sbjct: 268 PVNATPSAATPGRETKYKVPRLVLIILLPIIAAVNLVVCFCVWRRKRP 315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,953,554
Number of Sequences: 37544
Number of extensions: 180608
Number of successful extensions: 396
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)