Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2p06
(430 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132859-6|CAB60493.3| 324|Caenorhabditis elegans Hypothetical ... 30 0.61
Z68302-1|CAA92634.2| 382|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z68114-10|CAA92157.2| 322|Caenorhabditis elegans Hypothetical p... 28 2.5
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ... 27 4.3
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related... 27 4.3
Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical p... 27 5.7
AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical ... 27 5.7
AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical ... 27 5.7
Z93393-17|CAB07693.2| 751|Caenorhabditis elegans Hypothetical p... 27 7.5
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr... 26 10.0
U88170-8|AAB42244.1| 345|Caenorhabditis elegans Serpentine rece... 26 10.0
>AL132859-6|CAB60493.3| 324|Caenorhabditis elegans Hypothetical
protein Y39C12A.7 protein.
Length = 324
Score = 30.3 bits (65), Expect = 0.61
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 97 FAKMRKQIHTIVLPTVVVIFLLICVYVYIKTRPSTMHD 210
F K I + T+ IF+L+C Y++ K + H+
Sbjct: 224 FTASEKNIFLLSFDTIYTIFILVCPYLHYKNNTTWQHE 261
>Z68302-1|CAA92634.2| 382|Caenorhabditis elegans Hypothetical
protein ZK792.3 protein.
Length = 382
Score = 28.7 bits (61), Expect = 1.9
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +1
Query: 61 ETARQKRERKQEFAK-MRKQIHTIVLPTVVVIFLLICVYVYIKTRPSTMHDA*Q*LYYVN 237
ET ++ + +E A+ MR +I T+ P++ + VY +K + A + +
Sbjct: 147 ETTEKRSSKVKEMARFMRSKITTVHTPSIFSCIRMYSVYSIVKMLYLIIAIAQFVILAIF 206
Query: 238 RIYILDLFWGW 270
D+FWGW
Sbjct: 207 LDQEKDMFWGW 217
>Z68114-10|CAA92157.2| 322|Caenorhabditis elegans Hypothetical
protein F17A2.13 protein.
Length = 322
Score = 28.3 bits (60), Expect = 2.5
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -2
Query: 324 STKSLTCYHIESQSQLEKPPPE*VKNVYSIYIIKLLLCVVHRR 196
S++S C S S+ EKP PE V +Y KL VH +
Sbjct: 185 SSESSHCSASSSLSKTEKPEPENSNFVNELYYCKLARSQVHHK 227
>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
repeats, ras-likedomain, kinase protein 1 protein.
Length = 2395
Score = 27.5 bits (58), Expect = 4.3
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +1
Query: 1 DFFFADLLALKMRKLKGPVKETARQKRERKQEFAKMRKQIHTIVLPTVVVIFLLICVYVY 180
D F + ++ LK P E+ +ER + A+ H ++LPT ++ L+ C +
Sbjct: 1917 DCFSFGMFLYELLTLKFPF-ESEEHVKERMLDGARPVLLPHELLLPTPMLDLLVHCWSAH 1975
Query: 181 IKTRPST 201
++RPS+
Sbjct: 1976 PESRPSS 1982
>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
kinase protein.
Length = 2393
Score = 27.5 bits (58), Expect = 4.3
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +1
Query: 1 DFFFADLLALKMRKLKGPVKETARQKRERKQEFAKMRKQIHTIVLPTVVVIFLLICVYVY 180
D F + ++ LK P E+ +ER + A+ H ++LPT ++ L+ C +
Sbjct: 1915 DCFSFGMFLYELLTLKFPF-ESEEHVKERMLDGARPVLLPHELLLPTPMLDLLVHCWSAH 1973
Query: 181 IKTRPST 201
++RPS+
Sbjct: 1974 PESRPSS 1980
>Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical protein
T25E12.4a protein.
Length = 1101
Score = 27.1 bits (57), Expect = 5.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 139 LVTQSYEFVFAFSRILVFFP 80
LVT ++F F FS ++FFP
Sbjct: 1068 LVTYPFKFYFVFSCFIIFFP 1087
>Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical
protein T25E12.4a protein.
Length = 1101
Score = 27.1 bits (57), Expect = 5.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 139 LVTQSYEFVFAFSRILVFFP 80
LVT ++F F FS ++FFP
Sbjct: 1068 LVTYPFKFYFVFSCFIIFFP 1087
>AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical
protein T25E12.4a protein.
Length = 1101
Score = 27.1 bits (57), Expect = 5.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 139 LVTQSYEFVFAFSRILVFFP 80
LVT ++F F FS ++FFP
Sbjct: 1068 LVTYPFKFYFVFSCFIIFFP 1087
>AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical
protein T25E12.4a protein.
Length = 1101
Score = 27.1 bits (57), Expect = 5.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 139 LVTQSYEFVFAFSRILVFFP 80
LVT ++F F FS ++FFP
Sbjct: 1068 LVTYPFKFYFVFSCFIIFFP 1087
>Z93393-17|CAB07693.2| 751|Caenorhabditis elegans Hypothetical
protein Y48E1B.7 protein.
Length = 751
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 1 DFFFADLLALKMRKLKGPVKETARQKRERKQEFAK 105
DFFF + + K++K+K +K A + K+ FAK
Sbjct: 412 DFFFIENVVKKLKKVKKKIKNLAFLRLLVKKIFAK 446
>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
F47A4.2 protein.
Length = 3498
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = +1
Query: 40 KLKGPVKETARQKRERKQEFAKMRK 114
K++ +E ARQ++ER+++ A+MR+
Sbjct: 2685 KVRREKEEAARQEKERQEQEARMRE 2709
>U88170-8|AAB42244.1| 345|Caenorhabditis elegans Serpentine
receptor, class h protein49 protein.
Length = 345
Score = 26.2 bits (55), Expect = 10.0
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +1
Query: 7 FFADLLALKMRKLKGPVKETARQKRERKQEFAKMRKQIHTIVLPTVVVIFLLICVYVYIK 186
FF + +RK++ + R K+ +K F Q+ + +L VV +FLL + + +
Sbjct: 229 FFISHSLMYLRKIQNINTFSKRTKKLQKSFFRAGIAQVTSPILVIVVPLFLLTYILITKQ 288
Query: 187 TRPSTMH 207
P M+
Sbjct: 289 YLPGAMN 295
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,116,688
Number of Sequences: 27780
Number of extensions: 180359
Number of successful extensions: 592
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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