Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2o23
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   3.6  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    26   4.8  
SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   6.4  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 516  YTINSHTHNDIIIITSVSWDF 454
            YT + HT N I IIT+++ DF
Sbjct: 1587 YTYSQHTVNKIQIITNITLDF 1607


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -3

Query: 516 YTINSHTHNDIIIITSVSWDFVIGMEYNYANSTFIPSPW-KSIANICYEYISLRNI 352
           YT   H H  I++  S+ W  VIG         F+   W K    +   +  +RN+
Sbjct: 116 YTAKQHGHVYIMLKNSLKWLPVIGWGMQLFRFIFLSRKWDKDYETMSRHFKFIRNV 171


>SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = -3

Query: 504 SHTHNDIIIITSVSWDFVIGMEYNYANSTFIPSPWKSIA---NICYEYISLRNIGTRLRD 334
           S T +D++I+T  SW   +   + Y+ + + PS   + A   +I Y   S+ N G  L +
Sbjct: 70  STTVSDVVIVTDKSWSDGVETIFPYSYTEYQPSTTYTSAPAGSIGYA-ASIPNTGRELME 128

Query: 333 SNT 325
           S +
Sbjct: 129 SGS 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,041
Number of Sequences: 5004
Number of extensions: 52163
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)