Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2o23
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0598 + 34977063-34977220,34977957-34978101,34978362-349784...    29   3.8  
07_03_0485 + 18630758-18630786,18631331-18631458,18631490-186316...    28   8.8  
06_03_0559 + 22148773-22149210,22149478-22149684,22150065-221504...    28   8.8  

>03_06_0598 +
           34977063-34977220,34977957-34978101,34978362-34978481,
           34978640-34978774,34979138-34979213,34979398-34979450,
           34979594-34979695,34979848-34979964,34980170-34980228,
           34980810-34980984,34981628-34981762,34981855-34981953,
           34982143-34982251,34982981-34983093,34983206-34983265,
           34983821-34983835
          Length = 556

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/40 (32%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = -3

Query: 390 ANICYEYISL-RNIGTRLRDSNTAKVTSLDTNASDVLSFT 274
           +N C +++SL +N   R++D+ + + T  +TN S++ +FT
Sbjct: 245 SNKCEDFVSLVQNWLARIKDAGSLRGTFRETNLSELAAFT 284


>07_03_0485 +
           18630758-18630786,18631331-18631458,18631490-18631627,
           18632077-18632273
          Length = 163

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 153 YDSIVKDYLLYFEISPRLHFRQILIKTNNI 64
           Y+S V  Y +      RLHF+ I+ KTNNI
Sbjct: 133 YNSWVTIYHVLENKQRRLHFKGIVFKTNNI 162


>06_03_0559 +
           22148773-22149210,22149478-22149684,22150065-22150471,
           22150655-22151472,22151564-22151674,22151846-22152015
          Length = 716

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/59 (22%), Positives = 31/59 (52%)
 Frame = -3

Query: 429 ANSTFIPSPWKSIANICYEYISLRNIGTRLRDSNTAKVTSLDTNASDVLSFTFGACQDV 253
           +NS+ + SP K   ++  + +  ++I +  +++ T     +   ASD  +F+   CQ++
Sbjct: 250 SNSSTLSSPVKKSKSLMIKIV--KDIASTFKEAVTVNTKQMQNRASDKAAFSVKRCQEL 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,620,648
Number of Sequences: 37544
Number of extensions: 272762
Number of successful extensions: 459
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)