Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2o18
(746 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 33 0.043
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 33 0.043
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch... 28 1.6
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.8
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 27 2.8
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 27 3.8
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 27 3.8
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 26 5.0
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 26 5.0
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T... 26 6.6
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 8.7
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 8.7
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 8.7
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 8.7
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 25 8.7
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 8.7
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 25 8.7
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb... 25 8.7
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 8.7
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 8.7
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 8.7
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 8.7
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 33.1 bits (72), Expect = 0.043
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +1
Query: 148 IKNPIDLTEEDEICLKINEKGPNNKMTELETRQDELLNKLEILYERIKTISSQCKLDNMS 327
++N +DL + L I +G K+ LET +E+L K E L E + + + +
Sbjct: 564 LRNELDLVNKRNEDLLIELQGKEEKIQYLETENEEVLQKYENLQEELSSTRKLLTKNEAA 623
Query: 328 ANIQSSN 348
Q SN
Sbjct: 624 VAEQQSN 630
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 33.1 bits (72), Expect = 0.043
Identities = 18/67 (26%), Positives = 38/67 (56%)
Frame = +1
Query: 175 EDEICLKINEKGPNNKMTELETRQDELLNKLEILYERIKTISSQCKLDNMSANIQSSNAS 354
E ++ + ++ K ++ + L+ +D LN++EIL ER+ T+ Q K ++ +AN + S+
Sbjct: 234 EAQLEMYMSGKSEDDLLFSLQQERDYALNQVEILQERVDTLMKQ-KANSSTANEKLSHME 292
Query: 355 KVESVIT 375
+T
Sbjct: 293 SSSPTLT 299
>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 509
Score = 27.9 bits (59), Expect = 1.6
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = +1
Query: 91 MKRIVDHDDKIELPKCMYHIKNPIDL---TEEDEICLKINEK-GPNNKMTELETRQDELL 258
+K V+++ KI K + K +DL +E+D+ L+ K G + R ++++
Sbjct: 170 LKVRVNNNGKISSKKGVNLPKTDVDLPALSEKDKADLRFGVKNGVDMIFASFIRRAEDVI 229
Query: 259 NKLEILYERIKTISSQCKLDN 321
+ E+L E K I CK++N
Sbjct: 230 HIREVLGEEGKNIKIICKIEN 250
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -1
Query: 119 LSSWSTILFIT-YIIIYQPYPRCYSVFFFVLM 27
LS+W+ +L + Y + + YPR YS+ F+++
Sbjct: 3228 LSNWNNLLKLEEYKLSERVYPRLYSILQFIIL 3259
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 27.1 bits (57), Expect = 2.8
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Frame = -1
Query: 206 FSLIFKQISSSSVRSIGF-----LMWYI--HFGN-SILSSWSTILFITYIIIYQPYPR 57
FS IF ++ S + + F L+W + FG +LSSW LF++ + + P P+
Sbjct: 550 FSGIFDRVEKSVISELNFSFLFFLLWLLICAFGLIGVLSSWLKSLFLSLLDLVIPNPK 607
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -3
Query: 408 IRTQHQDNFLWCNYRFDF*GI*GLNISTHIVKLTLRANCL 289
++ +HQDN LW ++F I L++S +V++ R N L
Sbjct: 122 LKEEHQDNCLWRLHKFP-PDIYHLSVSAELVQVGRRFNSL 160
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 26.6 bits (56), Expect = 3.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 426 EYHFEKIQFTNTYNLSCPF 482
EY + FTN YN SC +
Sbjct: 215 EYRYVDFNFTNVYNTSCEY 233
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 628 LGNVNILRYLSLAYPTII-PYDHNDHIVDNLLDICHVL 738
+G + IL L ++ P ++ Y+H+D I +L CH L
Sbjct: 1745 VGYLRILSCLLVSLPAMVYTYEHSDPITFDLSVFCHKL 1782
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 340 SSNASKVESVITPEEVVLVLSPDSLPWYLNI 432
S++ + S+ITP E + D + WY++I
Sbjct: 410 SASKQPLHSLITPPEQEFIQKLDQIGWYISI 440
>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 477
Score = 25.8 bits (54), Expect = 6.6
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +1
Query: 247 DELLNKLEILYERIKTISSQCKLDNMSANIQSSNASKVESVITPEEVVLVLSPDSLPWYL 426
D + N+L +R + SQ K AN+ N++ +E I +E +L +PD L +
Sbjct: 32 DMITNELRNAIQRQRE-GSQSK--PQGANVDRVNSTNLEKDIDLQESLLTNNPDLLQTFK 88
Query: 427 NIILK 441
++K
Sbjct: 89 EAVMK 93
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 162 DRIFNVVHTFRQLYFIIVVNDPLHNI 85
D IF+ + FRQL I+ ND LH +
Sbjct: 369 DFIFHEGNHFRQLKLILEANDILHQL 394
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 400 SPDSLPWYLNIILKKSNLPIHTTCH-----VHSSVPSEKLAKIKAFTQKLKTS 543
+P +++N IL ++ H C+ +HS SE + +K QKLK +
Sbjct: 541 APAHFQYFINTILGEAK-ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNA 592
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 400 SPDSLPWYLNIILKKSNLPIHTTCH-----VHSSVPSEKLAKIKAFTQKLKTS 543
+P +++N IL ++ H C+ +HS SE + +K QKLK +
Sbjct: 541 APAHFQYFINTILGEAK-ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNA 592
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 400 SPDSLPWYLNIILKKSNLPIHTTCH-----VHSSVPSEKLAKIKAFTQKLKTS 543
+P +++N IL ++ H C+ +HS SE + +K QKLK +
Sbjct: 541 APAHFQYFINTILGEAK-ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNA 592
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 364 SVITPEEVVLVLSPDSLPWYL-NIILKKSNLPIHTTCHVHSSVPSEKLAKIKAFTQKLKT 540
+++ EE ++SP LP YL N+ S+ + + + + + QKL+T
Sbjct: 296 TILLREETKSLISPKKLPGYLENLFKSDSDNIVVALLLMQHKISNGNFRGALSIYQKLRT 355
Query: 541 SENPKVNLRLIF 576
S +L +++
Sbjct: 356 SLEASQSLSVLY 367
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 400 SPDSLPWYLNIILKKSNLPIHTTCH-----VHSSVPSEKLAKIKAFTQKLKTS 543
+P +++N IL ++ H C+ +HS SE + +K QKLK +
Sbjct: 541 APAHFQYFINTILGEAK-ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNA 592
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 142 YHIKNPIDLTEEDEICLKINEKGPNNKMTELETRQDELLNK 264
Y I+ +E+E+ K + NK+T L RQ ++ N+
Sbjct: 469 YDSDQEIEDADEEEVLEKASRIREKNKLTMLAARQKKIKNR 509
>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 281
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 204 FIDFQTNFIFFCKIDRIFNVVHTFRQL 124
FID+ + FFCK+ IF + F L
Sbjct: 84 FIDYSSLITFFCKLCVIFGLGFVFTYL 110
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 400 SPDSLPWYLNIILKKSNLPIHTTCH-----VHSSVPSEKLAKIKAFTQKLKTS 543
+P +++N IL ++ H C+ +HS SE + +K QKLK +
Sbjct: 541 APAHFQYFINTILGEAK-ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNA 592
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 400 SPDSLPWYLNIILKKSNLPIHTTCH-----VHSSVPSEKLAKIKAFTQKLKTS 543
+P +++N IL ++ H C+ +HS SE + +K QKLK +
Sbjct: 541 APAHFQYFINTILGEAK-ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNA 592
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 400 SPDSLPWYLNIILKKSNLPIHTTCH-----VHSSVPSEKLAKIKAFTQKLKTS 543
+P +++N IL ++ H C+ +HS SE + +K QKLK +
Sbjct: 541 APAHFQYFINTILGEAK-ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNA 592
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 400 SPDSLPWYLNIILKKSNLPIHTTCH-----VHSSVPSEKLAKIKAFTQKLKTS 543
+P +++N IL ++ H C+ +HS SE + +K QKLK +
Sbjct: 541 APAHFQYFINTILGEAK-ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNA 592
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,487
Number of Sequences: 5004
Number of extensions: 59673
Number of successful extensions: 211
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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